The principal problems encountered in the case of organic farming are that the annual implementation reports, which should give assurance about the objectiveness and effectiveness of the inspection system, are incomplete and not reliable.
Mahepõllundusega seonduv peamine probleem on asjaolu, et iga-aastased kontrollaktid, mis peaksid andma kindluse kontrollisüsteemi objektiivsuse ja tõhususe kohta, on puudulikud ja ebausaldusväärsed.