PACT-Net / logs /bindingdb-bench /gp+tanimoto /gp_ecfp_bindingdb_20250729_222309.txt
rk-random's picture
Upload folder using huggingface_hub
9a67fbe verified
raw
history blame
979 Bytes
Experiment: gp+ecfp on bindingdb
FOLD 1/5
Training GP model...
Evaluating GP model...
RMSE: 1.5326, MAE: 1.2571, R2: 0.0823
FOLD 2/5
Training GP model...
Evaluating GP model...
RMSE: 1.4593, MAE: 1.1720, R2: 0.0665
FOLD 3/5
Training GP model...
Evaluating GP model...
RMSE: 1.3997, MAE: 1.1361, R2: 0.1077
FOLD 4/5
Training GP model...
Evaluating GP model...
RMSE: 1.5166, MAE: 1.2414, R2: 0.0728
FOLD 5/5
Training GP model...
Evaluating GP model...
RMSE: 1.4447, MAE: 1.2015, R2: 0.0831
====== K-FOLD SUMMARY ======
RMSE: 1.4713 [1.4267, 1.5118]
MAE: 1.2018 [1.1635, 1.2397]
R2: 0.0824 [0.0722, 0.0958]
★ Using fold 3 model for test inference
Evaluating GP model...
RMSE: 1.7011, MAE: 1.2663, R2: 0.1177
====== HELD-OUT TEST METRICS ======
{'rmse': 1.7011460718590876, 'mae': 1.2663183300531364, 'r2': 0.11769805958162904}
Test RMSE: 1.6921 (95 % CI: 1.4672–1.9761)
Test MAE : 1.2645 (95 % CI: 1.1611–1.3713)
Test R² : 0.1160 (95 % CI: 0.0714–0.1646)