Datasets:

Karl28
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CellVerse

messages listlengths 3 3
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 ARHGAP24 ATXN1 RUNX1 FNBP1 ASAP1 RASGEF1B ARID5B ATG5 PVT1 AC068896.1 ZC3H12D RAD51B MIR29B2CHG TOX BACH2 AC008764.1 ZNRF2 CIC RASSF2 KAT6B SH3BP5 RAPGEF1 ARHGAP25 DOCK10 PIK3AP1 AC009226.1 TSPAN5 ITK BCL2 ZDHHC14 DUSP22 NEDD4L PLCL2 IL1RAP STK10 IKZF1 PLCG2 NSMCE2 PATL2 BANK1 ANKRD33B AMPD3 BCL2L1 LBH TSPOAP1 CDC42EP3 LINC00598 JADE2 LINC01135 NFATC2 LINC01185 AC008105.3 ITPKB RIPOR2 FAM107B PLEC CELF2 IL21R KANK1 AUTS2 AC010894.3 ST3GAL1 NDUFAF6 LPP CHST11 CAMK1D AL138752.2 RIPOR1 DOCK9 PRKCB NFKB2 AHR AMZ1 MIR155HG RGS9 CSK PHF19 MCF2L2 PLXNC1 SGK1 TGFBR2 SEPT9 LINC01358 STIM1 HIVEP2 AL591885.1 ECE1 KDM2B XXYLT1 FGD5-AS1 EMC9 CHD9 SUMF1 MRPL33 USP7 ZNF395 GDI2 CGGBP1 SERTAD2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 BACH2 ATXN1 CELF2 HIVEP2 ANKRD44 UBAC2 LINC01588 PATL2 KLF13 ETV6 TNFAIP8 LINC00598 LYN RASGEF1B HIVEP3 SETBP1 CCDC88C EBF1 MBNL1 AKAP13 CSGALNACT1 AC016831.7 EPS15L1 RAD51B ASAP1 NCOA2 ETS1 PVT1 MYH9 PRKCE LPP GNG7 RIPOR2 ST8SIA4 BCL11A MIR155HG DLGAP1 EPC1 SMAD3 TMEM131L CDH23 CCND3 TBC1D5 UST OSBPL10 PTK2B VMP1 MYO5A MSI2 PRKCB ST6GAL1 MBP TG ACTB DOCK10 NRL DLEU2 FBXL19 CYTIP SUSD6 MACF1 PDE4B MAST4 RERE FOXN3 ANXA11 PTPRJ AUTS2 ATG5 CDC14A BCAR3 ARID5B TSPOAP1 RPS6KA2 RMI2 PALM2-AKAP2 BCL2 CRYBG1 TBC1D22A MGAT5 SERINC5 SNX9 NEAT1 RBPJ MAML2 AL031599.1 DUSP22 BICRAL RASSF3 CIC DNMT3A ZNF365 CHST11 PLEC IQSEC1 TGFBR2 IKZF3 CD82\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 AC016831.7 RFX3 IKZF1 ARID5B AC068896.1 MEF2C FOXN3 AC063949.2 ST6GAL1 RMI2 GALNT2 ADAM19 PRKCH RAD51B MBNL1 MTSS1 UMAD1 POU2AF1 ETV6 PDE4D BCL2 LPIN2 LPP LINC01588 HIVEP2 AC009126.1 CFLAR ETS1 AC007384.1 PDE4B MXI1 TMEM131L P2RY8 CORO1C BCOR ITPKB AMPD3 KAT2B HOOK2 KDM2B ARHGAP24 SLC39A10 SLC2A1 SEPT9 WWOX LBH PCAT1 NEAT1 BCAR3 SERTAD2 CAMK2D ARHGEF2 ABTB2 SGMS1 CELF2 XXYLT1 INPP5A MAML3 PLXNC1 PRKCB RASGEF1B OSBPL3 AKNA CDH23 LINC01004 TMEM154 RPS6KA2 ELF2 CARS2 SETBP1 TG RAB30 CLIC4 MEF2D LMBRD1 CLEC2D TTC21B TRMT1L PRKAG2 CASP8 AL359710.1 FAM107B RREB1 ARHGAP25 ARID1B CASK MAP3K5 HECW2 ST3GAL1 KLF6 ANK1 QKI CIC SPART CCR7 PCDH9 CXCR5 LINC01126 RIPOR2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP FOXP1 ATXN1 MAML2 BACH2 ARID5B RAD51B BCL11A RASGEF1B RMI2 CELF2 SETBP1 LPIN1 CCDC6 TNFAIP8 AC010894.3 TSPOAP1 ST6GAL1 CHST11 SH3BP5 UBAC2 FOXN3 ETS1 ARHGAP25 SEPT9 NEAT1 IKZF1 KLF9 TFEB PPP1CA CYTH1 MARCH3 AC016831.7 JADE2 SSH2 RAPGEF1 ANKRD44 B4GALT1 USP3 RUNX1 CD82 HDAC9 NDUFV2 CLEC16A HECW2 UST AL138720.1 ZCCHC7 PVT1 AKAP13 P2RY8 CIITA KLF13 ARID1B CSGALNACT1 TGFBR2 LINC00598 PRKCE PIK3C2B TBC1D5 BCL6 EBF1 TRANK1 SMAD3 CARS2 SSPN STPG1 MBNL1 XYLT1 RAB30 RIPOR2 RFX3 MICAL1 MIR155HG ELMSAN1 FGFR1OP ZFP36 ETV6 RASSF2 IKZF3 RBMS1 XPO1 AC084200.1 HIVEP3 HMGB1 TRAF1 PRKAG2 EHD1 LYN JARID2 BCL2 ENTPD1 TRIO DSE NKIRAS1 GRK5 MYH9 GSK3B LINC01588 FOXO3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 BACH2 ATXN1 FOXP1 CELF2 PDE4B UBAC2 BCL2 TSPOAP1 PIP4K2A FYN CYTIP ITPKB TG TNFAIP8 RUNX1 TTC33 RNF216 MAML2 SORL1 AC010894.3 LINC00598 FAM107B ECE1 ANKRD44 JMJD1C LINC01588 HIVEP2 SDR42E2 CCND3 ARHGAP15 STK10 AKAP13 AC016831.7 CD247 PDE4D RAD51B ARHGAP26 PCAT1 LIPA ARID1B ATG5 HIVEP3 UST RMI2 RAPGEF1 LINC01934 ARID5B RAP1GAP2 NFATC2 AC009126.1 BCL11B ARHGAP25 PRKCB RIPOR2 ELMO1 KAT6B ST3GAL1 GPR68 SEMA4D IQGAP2 PVT1 RUNX3 CROCC ABHD15-AS1 PATL2 HOOK2 CHST11 VOPP1 STIM1 STK17B LPXN SGK1 AUTS2 DNM2 LMO4 AKNA EVL NFKB1 MAST4 MGAT5 CCDC88C SGMS1 ANKRD11 TMEM131L FOXN3 RRAS SMG6 INPP5A IKZF3 FNBP1 HDAC4 ITK TLDC1 FBXO11 EHD1 FYCO1 LINC01135 AC099063.1 G3BP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PDE4D RAB30 MOB1B LINC01588 RUNX1 MGAT5 GNB2 KLF13 ETV6 FOXP1 RAD51B MARCH3 TIPARP LRCH1 RIN3 BCL2 RMI2 ETS1 ARHGAP25 RBMS1 AC068896.1 RHBDD1 LINC02356 TMEM243 KDM4C FOXN3 PALM2-AKAP2 TPR DOCK8 FCHSD2 MTA3 RASGEF1B ZFAT LPP RGMB STXBP5-AS1 CXCR4 CAND1 MAP3K3 HDAC7 LRMP PHF20 ADAMTSL4 NXPE3 PPIG CREB3L2 HIVEP2 METTL8 VMP1 LINC01353 LBH PPP2R5C DSE ARHGAP15 CTNNBIP1 MAML2 MBNL1 SCAF11 FAM219A MTMR1 RHOBTB3 OXSR1 DPYSL2 CCDC88C MBOAT7 TRANK1 AC120193.1 L3MBTL3 HDAC9 AL138720.1 PRKCB ZNF608 LHPP ZFAND3 PRKCE SESTD1 AP001636.3 PLCL2 ELP1 EDEM1 MYH9 ARHGAP24 PDXDC1 ELMSAN1 ANK3 FAM172A CIC AP002884.1 FOCAD GNAS AL160408.2 INKA2 CMIP RPS6KA5 CEP120 RAP2A NDRG1 PTPRJ MBP EIPR1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CHST11 RAD51B LINC01588 RUNX1 LPP BACH2 ARID5B AC016831.7 ANKRD44 ITPKB AC068896.1 CELF2 RMI2 P2RY8 HIVEP2 UBAC2 TNFAIP8 AC010894.3 INPP5D BLK FOXN3 ST6GAL1 KLF13 BCL2 AKAP13 MEF2C AC063949.2 TFEB LDLRAD4 SUSD6 EBF1 SETBP1 ELF1 LINC00598 FAM107B AMPD3 IQSEC1 RFTN1 IKZF1 FLI1 LIPA PRKCB ELMO1 SERTAD2 INPP5A TBC1D5 RASGEF1B LYN SEPT9 PVT1 CIITA ETS1 DOCK10 CCDC69 GRK5 DLEU2 STK10 MBP CCDC88C POU2AF1 CARS2 PPP3CA IKZF3 NEAT1 PLEKHG1 PDE4D LINC02240 UST PALM2-AKAP2 LHFPL2 AUTS2 VOPP1 RIPOR2 CRYBG1 UMAD1 AC079313.2 LRRFIP1 SPTBN1 NIN ST8SIA4 JMJD1C ENTPD1 OSBPL3 PPP1R16B CYTIP PLXNC1 PRKRIP1 PAX5 LBH GNG7 ARHGAP25 CDK14 B4GALT1 OSBPL10 TRABD2A SSPN CAMK2D SLC9A9 PCGF5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PVT1 BACH2 IKZF1 TNFAIP8 RUNX1 ETS1 ITPKB LINC01588 NFATC2 ABTB2 MGAT5 RFTN1 RAD51B PLEC ETV6 PREX1 ANKRD44 ACTB BCL9L ZBTB20 AC068896.1 SMAD3 AL390957.1 SEPT9 TSPOAP1 UBAC2 STIM1 MAML2 ZFP36L1 FYN ZMIZ1 UST EBF1 RIPOR2 BCAR3 ATXN1 NEAT1 HOMEZ AC009226.1 SEC22C INPP5D TMEM131L PRKCB NCAPH2 ACOXL NFE2L2 EHD1 TTC33 BCL11A AC016831.7 BCL2 CDC42SE2 SERTAD2 ANKRD33B FOXN3 JMJD1C ARHGEF3 IKZF3 CELF2 STK10 CCDC88C PIP4K2A ECE1 MBNL1 KAT6B ARHGAP26 RREB1 PTK2B LPXN SWAP70 ZC3HAV1 ARID5B RAPGEF1 BCOR OGDH ARHGAP25 TRAF1 BANK1 ARHGAP15 PLXNC1 LPP LDLRAD4 ITPR1 TAB2 TCF4 TNIP1 NUAK2 ST8SIA4 IQSEC1 MBP P2RY8 SEPT11 LINC00598 PDE4B DOCK10 AC069368.1 RFX1 NEMP1 PNKP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 CIITA RIPOR2 CHST11 RAD51B ETV6 MAML2 ARHGAP25 LPP DNM3 PDE4B CDC42SE2 PIP4K2A TSPOAP1 ARID5B ADAMTSL4 ANKRD44 SETBP1 SAMD4A RMI2 IQSEC1 BANK1 LINC01588 FOXN3 NFATC2 HIVEP2 DHTKD1 DOCK10 CELF2 MAST4 KLF13 MGAT5 ST3GAL1 BCL2 DLGAP1 JMJD1C STIM1 GRK5 AKAP13 AC016831.7 CSGALNACT1 FYN RASSF3 GFOD1 DNAH2 ELMO1 ZBTB20 TNFAIP8 ECE1 RASGEF1B NLRC5 INPP5D CD82 SMAD7 AC008764.1 LHFPL2 ENTPD1 KMT2C NSMCE2 UBAC2 ARHGAP24 SWAP70 ATG5 WWOX CYTH1 PAX5 MAP3K3 XXYLT1 MAPK1 LAPTM5 AMPD3 LPIN1 TUBA4A SLC43A2 STK17B GNG7 AP000424.1 CFLAR IKZF3 STAMBPL1 AL139383.1 ANKRD33B AFF3 HOOK2 CLEC16A SSPN RABGAP1L DTNB ANKRD11 RNF4 MYO5A FAM107B KLC2 BLK ARHGAP26 RAPGEF1 LIPA PPP2R5C PRKCE\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIPOR2 RUNX1 LDLRAD4 FOXP1 ADARB2 AP000787.1 ZBTB20 HIVEP3 ITPKB TSPOAP1 LIPA GRK5 DLEU2 STK10 C16ORF74 EBF1 RAB11FIP4 TGFBR2 AMPD3 ZC3H12D MOB3B UST VOPP1 CRYBG1 FLI1 PLEKHA2 NEAT1 MDFIC AC063949.2 PTPRJ MAD1L1 TG ETV6 CLEC16A PIP4K2A KLF13 ST6GAL1 DTNB DRAM1 P2RY8 AC109454.3 FAM107B TCF4 COTL1 SHISAL2A XXYLT1 PLSCR2 LBH MSI2 IQGAP2 RASSF2 AC010894.3 PLAGL1 CD82 POU2AF1 ARSG SH3GL1 ST3GAL1 PPP2R5C NRROS AC016831.7 CARS2 ECE1 DNM3 BCAS4 PDE4B SKI IVNS1ABP PCGF5 GALNT2 TMEM131L STK17B HIVEP2 CSK UTRN HPCAL1 PIEZO1 ENTPD1 ELOVL5 ITPR1 PTPRG AKAP13 MGAT5 CASP8 ARID5B C7ORF50 CCDC69 ITPR2 GPCPD1 AC093423.3 CABLES1 AC005258.1 SEPT9 NCK2 RERE ACSL1 RIPOR1 SMIM14 PXK N4BP3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 IKZF1 ANKRD44 ATXN1 LINC01588 RIPOR2 FYN UBAC2 CELF2 CHST11 P2RY8 RFTN1 KDM2B BCL2 ARID5B MTSS1 RUNX1 RAD51B TNFAIP8 ARHGAP25 ETS1 AC008014.1 MAML2 IKZF3 PVT1 AKNA CDKN1B ATG5 PPP3CA CARS2 PLXNC1 AC016831.7 UMAD1 PIP4K2A AC022182.1 HMGB1 DOCK10 RASSF3 LINC00598 TLE4 RARA LPP ECE1 SLC38A1 MBP SH3KBP1 ARHGEF3 LINC01185 MEF2C AC063949.2 TMEM131L KLF13 CMIP HIVEP2 AP000787.1 ASAP1 TBC1D5 ETV6 PTK2B ARID1B BACH2 EBF1 WWC3 FOXN3 LAPTM5 FAM107B DLGAP1 AP000311.1 PDE4D ACOXL TGFBR2 C15ORF53 PAX5 TMSB4X AL359736.1 ELMO1 ZBTB20 CXXC5 PTPRC SMAD3 IFNGR2 PCED1B ARHGAP26 AC084200.1 MTO1 RAPGEF1 MAP3K5 PLCG2 FOXO1 NEMP1 STIM2 ARHGAP15 ZDHHC14 TPD52 AC009226.1 AHR LINC01215 ADAM19 LINC02240 ATP8A1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ANKRD44 SSPN RMI2 SERTAD2 ANKRD33B ELMO1 SGMS1 TGFBR2 INPP5D CIITA ARID5B EBF1 CDC42SE2 DUSP22 CPOX GRK5 HIVEP2 DTNB MAML2 AP000311.1 PCED1B HIPK2 NLRC5 DNM3 ETV6 TCF4 RAD51B SETBP1 OSBPL10 FYN PVT1 ARMH4 IL16 MGAT5 ANKMY1 UMAD1 AKAP13 UBXN11 PLXNC1 ASB2 PALM2-AKAP2 CFLAR AHR VOPP1 FAM107B BANK1 LINC01126 TRIM8 LINC02240 SEMA4D AC010542.3 ARHGAP25 IKZF1 JMJD1C FOXN3 PRKRIP1 LPP FGGY ZEB2 RFX3 MYO5C AC008691.1 NDUFAF6 TAOK3 AC009126.1 DSE ARID3A UBAC2 PPP3CA BLK HMGB1 OSBPL3 LINC00877 CARS2 LIPA AC008764.1 FOXP1 CYTIP MBNL1 NEMP1 KLF13 CMTM7 SSH2 KSR1 DAAM1 SEPT9 RERE RAB11FIP1 RNF170 CXXC5 MTSS1 DAD1 SEPT6 ARHGAP15 LINC01934 NFATC2 MIR3681HG POU2AF1 CCDC88C STK10\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CD82 COMMD10 CLASP1 MYO5A BRWD3 UBE2D2 TSPAN14 LINC01003 HINT3 SLC25A12 SSPN MYL7 RIPOR2 ZFAND1 TMEM131L JAZF1 PLPP1 TMED7-TICAM2 ORC2 GUCY1B1 RAP1A NRGN AC069368.1 MIPEP USP37 WDSUB1 ZC3H8 PGGT1B FAM184B UBE2J1 ZDHHC17 ARHGAP26 L3HYPDH NHSL1 CEP128 DOCK2 FCRL4 AL136961.1 CFAP58 GSAP MAN1A1 BCL2L2-PABPN1 AKNA CPNE8 SEL1L MAT2B AC117834.1 TMEM189-UBE2V1 TCTN1 AL354732.1 PCMTD1 NEK7 PPM1B PDZD8 AL357060.1 HERC4 SPINK2 PNISR ODC1 AC005618.1 LINC01816 AL357078.1 FBXL5 SPATA24 CCDC74A GRAMD4 TMEM131 ABCB4 AL606489.1 AC073283.3 HDAC3 ANK1 SETBP1 RAB6A FBXL17 SHPRH DPY19L4 MRPS27 TGM5 MXD3 ANXA6 EFHC1 AJ009632.2 AC105227.1 AC116366.3 XPNPEP1 MDC1 ASXL1 ETS1 PANK1 MYLK4 CNOT1 PGRMC2 LIN54 HIF1A-AS1 CCDC141 LY86-AS1 ARHGAP15 RFTN1 ARL14EP\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RAD51B MAML2 UBALD2 RPTOR POU2F2 LPP PHF19 TCF4 PVT1 LINC01185 ARHGAP24 AC016831.7 PDE4B ARHGAP25 IL21R IL4R KAT2B TBC1D5 RERE ETV6 CIITA NEMP1 LINC01588 ANKRD44 GALNT2 RFTN1 EHD4 LPCAT1 PRICKLE1 LBH LAPTM5 TRAF1 C1ORF112 NEDD9 UBAC2 RUNX1 RGS3 VMP1 GSE1 AHR MIR155HG STK10 ST6GALNAC3 IL2RA ECE1 KLF10 RPL23A AFF1 BACH2 RASSF3 BANK1 CSGALNACT1 CDC42SE2 CLK1 SEPT6 ARID4B TGFBR2 AC022217.3 TRAJ28 PLEC MAML3 AC008105.3 CIC MREG CPED1 PLXNC1 FOXN3 DLEU2 IL15RA SKI MTMR1 JMJD1C LIPA KANSL1 ZC3H3 HIVEP3 CBLB AC034114.2 MCOLN2 AFF3 CHST11 VIM-AS1 ZNF365 LRCH1 LINC00598 RAB11FIP1 PTK2B KCNC4 SPRED2 IKZF1 NEK8 PRDM8 CELF2 KDM7A AHNAK ALCAM RARA ARMH4 VRK2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LINC01588 RUNX1 UBAC2 FOXP1 CDC42SE2 RAD51B MBP SEPT9 AC068896.1 ARHGAP26 SEMA4D TNFAIP8 GRK5 CARS2 PIP4K2A RIPOR2 ARHGEF3 MAML2 PPP2R5C HIVEP2 ETS1 ARHGAP25 NFATC2 AL390957.1 ARHGAP15 ANKRD44 BCL2 AKAP13 FYN CBLB KLF13 INPP4A RHOH CD82 AKNA ATXN1 ST3GAL1 MAP3K3 STIM2 NCK2 MAP4K4 HECW2 ST8SIA4 G3BP2 AC009126.1 KANSL1 PATL2 DLEU2 NSMCE1 LIPA RB1 XYLT1 CELF2 NCOA2 ASAP1 TRANK1 FOXN3 COTL1 RNF38 PPP1R10 SMARCA2 STK10 IRF2 ARID5B RHOF MGAT5 CD96 CYTIP JMJD1C SIN3A STARD3NL RFTN1 CDH23 SIAH2 LPP IFNG-AS1 UST CHST11 PVT1 ALPK2 PRKCE ZBTB20 SIK3 PCAT1 PITPNC1 C7ORF50 SMAD3 MCM9 MXI1 PER1 EVL ANK3 CCNG2 LINC00402 ARRDC3 GSK3B KLF12 ARID1B PRKCH FRYL\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC009126.1 UMAD1 FAM107B CDC42SE2 LINC01754 ASAP1 TNFAIP8 TRIO ARID5B ARHGAP24 SETBP1 CD44 COBLL1 CMSS1 MIR29B2CHG STPG1 KLF13 HIST1H1E LINC00598 ENTPD1 DRAM1 GABPB1 NOTCH1 RUNX1 PARP1 CAPN15 MACC1 GRB2 TPD52 TNFSF10 MAP3K14 PREX1 PTK2B AC120024.1 PLEKHF2 ARHGAP25 PRKCB AP3B1 PIK3AP1 MGAT5 ZCCHC2 KDM2B CASP9 ELF1 LRRC8B SUMF1 TG CSGALNACT1 ITPR1 DOCK10 IKZF1 ANK3 ANKRD44 ARHGAP15 ABHD15-AS1 AKAP13 ITPR2 RSPH14 FOXN3 ANP32A SLC12A6 PVT1 LRRFIP1 AC016831.7 GNG2 IKZF3 ZNF627 ADD3 SLMAP SMU1 TCF4 MDFIC CCDC141 RFTN1 LRCH1 CCND3 AC120193.1 ABHD14B ZDHHC5 MYO5C SCAMP4 AC012506.4 AL390957.1 NDUFAF6 ATP8A1 FOXP1 GDE1 ZNF3 NUDT2 SEC23B GNL1 SPIB LINC01185 ZBTB16 METTL23 OSBP LMTK2 DAPP1 STAG3 ARAP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 AC010894.3 NR4A2 FOXN3 IL19 CD82 GRK5 PARP8 LINC01126 AL136368.1 PRKCE STK24 AC068898.1 BCL2 TNRC6B LDLRAD4 AL390957.1 KCNQ5 RBM47 RMI2 VAV3 TRPS1 HIVEP2 MTSS1 PPP2R5C OSBPL10 TLE1 CCDC69 FBXO30 ZNF516 SP1 NCOR2 TRIO RNF111 CFLAR SERTAD2 ARHGAP24 RASGEF1B ZNF608 ACAA1 TNFAIP8 LPP FGFR1OP ARHGAP15 PRKCB RIPOR2 JADE2 CXXC5 AL356417.3 ZC3H12D TRA2B NPAT STIM1 MARK4 GRK6 RPS6KA2 ZPBP DDAH2 PATL2 PDXK WWOX ANKRD33B IKZF2 PRKCD CHD1 SPTBN1 PLEC CMTM7 SLC6A6 PIP5K1B TBC1D2B PABPC1 PLEK AC099524.1 POU2F2 SLC2A1 ARID3B MARCH3 MAP2K3 LYN PICALM ST6GAL1 AL359710.1 PNISR VOPP1 ACSL4 LINC01588 THADA RUNX1 SGMS1 CLEC16A ASAP3 PREX1 UPP1 CCDC12 ARMH4 MCOLN2 FCMR IQSEC1 NFKBIZ\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL359736.1 FOXP1 ANKRD44 FAM107B BCL2 ARHGAP15 AUTS2 CELF2 UBAC2 STIM1 PIP4K2A RUNX1 MIR3681HG TSPOAP1 LIPA MAML2 AKNA CYTIP PDE4B LPCAT1 HIVEP2 JARID2 IL2RA ARID5B TNFAIP8 RIN3 PFKFB3 LPP ETV6 RASGEF1B LDLRAD4 CMTM7 S1PR1 ST6GAL1 MFHAS1 RMI2 AC016831.7 MOB3A ARHGAP25 ETS1 LINC01126 LINC00598 CAMK2D PRKCE CHST11 EML6 ARNTL TG CARS2 JMJD1C CD82 RUBCN FYB1 ERCC1 KLF9 CDK13 U2AF2 AC063949.2 SETBP1 SLC9A9 FOXP4-AS1 TGFBR2 MBNL1 FAM117A TPK1 GFM1 ABHD15-AS1 CBLB AC009126.1 RPTOR CPEB3 CDH23 ELF4 CCDC88C FOXN3 AKAP13 TLE4 PIK3AP1 SH3KBP1 TAOK3 RALGAPA2 CFLAR ADAM19 ITPK1 IQGAP2 CD74 IKZF1 ZNF487 EPSTI1 IL10RA IRF2 PATL2 CYTH1 DLG4 LIX1-AS1 CACUL1 ST3GAL1 PLCG2 MBOAT7 HDAC7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: INTS6 DLEU2 TNFAIP8 UMAD1 ZCCHC2 SH3KBP1 AC068896.1 BCL11A TRMT10A MAML2 AIM2 MBNL2 KDM7A BACH2 MIR3681HG KLF13 BANK1 MTPN PMAIP1 ZBTB20 FAM49A AL157935.2 IL21R PRKCE SPATS2L ANKRD33B RASGEF1B AL031599.1 CHST11 BCL2 PHKB TGDS NFKB1 INTS4 AL355315.1 RPS6KC1 PSAP WNK1 SLC4A2 UTRN ZMIZ2 PTPRE TMEM189-UBE2V1 FOXO1 KLF6 SETBP1 FOXO3 RPL22L1 PASK MIR4435-2HG INO80B RBMS1 ZFP36L1 WDR12 TPD52 MBNL1 TTC39C IFNGR2 IDI1 PDE4B ZNF630 CCDC148 ECI2 APBB3 RNF4 RFX3 AMZ1 ARID1A MIR29B2CHG ARID1B AC021678.2 COL9A3 RECQL ZNF558 TAPT1 FRS2 ATP10D INTS9 SH3GL1 GRK5 PLEKHA7 RHOBTB3 PALM2-AKAP2 IRF3 AC016831.7 TBCCD1 SCOC SPTBN1 AC009226.1 AL137145.2 SYS1 NCK2 PRKCH AC097713.1 JADE2 MOB1B AP000311.1 NT5DC1 SPTLC2 MSMO1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC068896.1 RAD51B BCL2 P2RY8 FOXN3 BACH2 PALM2-AKAP2 RUNX1 ARHGAP26 PCAT1 IQSEC1 ARHGAP24 LINC01135 TNFAIP8 AC009126.1 DUSP22 INPP5A MAD1L1 LPP FRY HDAC9 SLC38A1 FLI1 TBC1D22A ARHGAP25 LINC01588 MEF2C RIPOR2 UST GDI2 ARID5B SETD3 PVT1 ELF1 UGCG ZBTB17 NINJ2 SNX9 FOXP1 PTPRC LCOR TSPOAP1 SH2D3C RPL13A CROCC HDAC7 SLC35B2 GAS7 CCDC88C RAPGEF1 RMI2 PTPN1 BLK AL357060.1 ABTB2 NFKB1 STK17B COA1 LINC01484 TGFBR2 LCP1 CFLAR TCF4 CELF2 HECW2 LINC00598 AL353616.2 CDC42SE2 EBF1 AC007991.3 PLEKHG1 AC084200.1 EHMT1 CCDC12 RREB1 CDH23 HOOK2 CDK19 PAX5 SETD2 PARP14 AL136962.1 MAP3K5 NDUFAF6 TIGIT XYLT1 DLEU2 AC116366.3 RARA TMEM131L LDLRAD4 UMAD1 PARP15 GNG2 TMIGD3 MGAT5 DUS2 PRKCB CARS2 PFKFB3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 HIVEP2 RAD51B ARID5B INPP5A MTSS1 DOCK10 FOXN3 LPP AL390957.1 ARHGAP26 TCF4 ETV6 XXYLT1 PLEKHA2 XYLT1 MAML2 PDE4B IKZF1 ARHGAP15 ANKRD44 SEPT9 PRKCE MGAT5 ST6GAL1 PPP1R16B TNFAIP8 ARHGAP25 CMTM7 RMI2 UBAC2 NR3C1 ZNF608 PRKCB PPP3CA PVT1 LDLRAD4 SERTAD2 RIN3 LRRFIP1 GRK5 BACH2 PCGF5 LBH LFNG SLC39A10 RIPOR2 NCK2 ZDHHC14 P2RY8 CBLB JMJD1C ST8SIA4 AKNA RASGEF1B MAP3K5 NR4A2 BACH1 SETBP1 DNMT3A SGMS1 LIPA CYTIP MBNL1 DUSP22 INPP5D UMAD1 AUTS2 GNG2 SH3BP5 STIM2 SAMD4A CHST11 VOPP1 ZBTB20 CAMK2D TNIP1 RAPGEF1 ETS1 ARHGAP24 CELF2 ADARB2 CSGALNACT1 AKAP13 CDK14 WDFY1 ANK3 BCL2 HECW2 MEF2C TG AC008124.1 AC116366.3 SOD2 AFF1 ELF1 TGFBR2 DRAM1 AL357060.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATXN1 RAD51B RUNX1 FOXP1 FOXN3 PDE4B CYTIP RASGEF1B ANKRD44 IKZF1 PCAT1 LPP ARHGAP25 AL390957.1 RIPOR2 ETS1 TBC1D5 SLC35B2 BLK MTSS1 EBF1 ATP8A1 AC016831.7 ETV6 HDAC9 MXI1 ATG5 PATL2 HOOK2 JARID2 DTNB CRYBG1 ARID5B PHF21A CELF2 ST6GAL1 LINC01588 ABTB2 CCND3 C1ORF112 OSBPL10 TNFAIP8 AC068896.1 TLR1 SGK1 TTC33 IQSEC1 NCK2 IKZF3 PACS1 MAML2 MDFIC ELF1 TMEM243 VCPIP1 KDM2B PARP8 ECE1 UMAD1 BCL2 SERTAD2 NIN POU2AF1 BACH2 BTLA RASSF3 PAX5 ITPKB CDCA7L UTRN HSP90AB1 HECW2 FOXO1 RMI2 AC063949.2 SETBP1 UBAC2 LPIN1 TMIGD3 CIITA CCDC88C DUSP22 BCL11A PLEKHG1 TGFBR2 PALM2-AKAP2 ASAP1 CDKN1B RARA SPAG1 IRF8 AC084200.1 VAV2 TMEM131L GTF2A1 PVT1 KAT2B LCP1 DOCK10 LINC02240\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARID5B MIR3681HG ST6GAL1 CPOX PALM2-AKAP2 HNRNPA2B1 ISG20 LIPA PCGF5 PVT1 SGMS1 BHLHE40-AS1 BCL2 INPP5A DPYSL2 JMJD1C AKAP13 AHR CELF2 CD82 AKNA TM9SF2 RIPOR2 HIVEP2 AC016831.7 JADE1 CHST11 RFTN1 CDC42SE2 ARHGAP25 RMI2 AC069368.1 ATXN7 UMAD1 SNTB1 COA1 RARA PCAT1 CCDC88C SAMD4A AC013270.1 ZMIZ1 ATP8A1 TTC33 DOCK10 BANK1 PDE4D LDLRAD4 PIP4K2A FLI1 DNM3 RAP2A POU2F1 AC008691.1 AP1S3 STK17B RAD51B PDE4B CIITA ADAM19 LGMN ATXN1 CNDP2 C15ORF53 BACH2 OSBPL10 UBAC2 FSD2 LINC01588 PSMA1 CDKN1B IKZF3 SERTAD2 DGLUCY UBP1 VOPP1 TSPOAP1 SSPN MACC1 AC022182.1 EBF1 TMEM64 GATAD2A P2RY8 EEPD1 GSK3B CRADD DSE CLDND1 ANKRD33B ATP6V1E2 AC084026.2 SUSD6 DGKD SEC22C AP000787.1 TGFBR2 FOXN2 ACTR3 CRYBG1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH RIPOR2 LINC01588 UBAC2 RUNX1 HDAC4 CELF2 AC068896.1 IKZF1 HIVEP3 AC016831.7 KLF13 CCDC88C MBP TNFAIP8 ATXN1 ETS1 RASSF3 SEPT9 AKNA ANKRD44 ITPKB ARHGEF3 CDC42SE2 PVT1 STK10 LINC00598 DRAIC HIVEP2 VMP1 ZFP36L1 CD82 PDE4B RASGEF1B VOPP1 UTRN ZNRF2 ATG5 BCL2 FGD3 ST3GAL1 TMEM131L BCL11B HECA RNF216 AC010894.3 MYH9 OGDH CFLAR ELMO1 FAM107B FAM49B CCDC12 AL357060.1 AL359736.1 TBC1D5 AP000787.1 GNG2 GRK5 OSBPL3 RHOH NCK2 SUSD6 TG LPP RPS6KA2 SEMA4D PJA2 NFATC2 JMJD1C ARID5B RERE SERINC5 GNL1 MNT RAD51B PPP1R16B PLEC CYTIP PTPRC ITPR1 TGFBR2 ZMIZ1 TLDC1 TRABD2A S1PR1 PIP4K2A IQSEC1 PITPNC1 RAB11FIP4 TSPAN14 FRYL MGAT5 ARID1B IL7R AC009126.1 GRK6 AC008764.1 SIK3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: LPP FOXP1 PAX5 GRK5 BCL2 CELF2 XXYLT1 CD83 RUNX1 AC016831.7 AC068896.1 CCR7 INPP5D HECW2 PALM2-AKAP2 HIVEP2 MAML2 WDR27 ANKRD44 LINC01588 CARS2 RAB11FIP4 AKAP13 IKZF1 ARID5B CD82 AC084200.1 MAML3 LIPA CBLB BLK ELMSAN1 SGMS1 LBH DGKD AC022182.1 CHST11 AKNA RAD51B FOXN3 FLI1 MGAT5 NCK2 CCDC88C MARF1 PLEKHA2 HDAC4 RASGRP3 CDK14 STK10 RBMS1 SH3KBP1 CXXC5 PDE4B KLF9 ITPKB PIK3AP1 ARHGAP25 AC080129.1 POU2AF1 SERTAD2 RERE C1ORF112 HOMEZ ETS1 KLF6 SIPA1L3 MYH9 TCF4 AL159163.1 EPS15L1 EBF1 GALNT6 LRRFIP1 BCL11A BACH2 RASSF3 PLCG2 FAM107B SETBP1 RFTN1 CROCC OSBPL3 CAMK2D ZC3H12D RIPOR1 CYTIP ZCCHC7 UBAC2 ZBTB16 UTRN SEPT9 ARID4B ARHGAP31 IKZF3 NUAK2 AP000424.1 LFNG LDLRAD4 IL16\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CHST11 ITPKB CBLB RUNX1 VAV3 IQSEC1 STK17B AKAP13 RAD51B PVT1 STIM1 FOXN3 CASP8 BCL2 PAX5 PRKCB RHOF TNFAIP8 INPP5D ARHGAP15 NEAT1 NCK2 ETS1 RIN3 DNM3 CRYBG1 RERE OSBPL3 AC068896.1 B4GALT1 AL359710.1 EBF1 BLK ST3GAL2 HIVEP2 TRAK1 ATXN1 POU2AF1 JAZF1 AMPD3 BANK1 LINC00598 PALM2-AKAP2 SLC9A9 IRF2 PLCG2 C8ORF37-AS1 NFE2L2 TGFBR1 RMI2 UST AHNAK PREX1 JARID2 PLXNC1 CYTIP CCDC69 ARHGAP25 ANKRD44 PPP1R16B WDR12 TSPOAP1 PRKAG2 ETV6 NEMP1 AL390957.1 MACC1 UBAC2 BCOR TTC33 MTSS1 ZBTB20 SPTBN1 TBC1D2B PRKCE AC016831.7 CD82 MAML2 XYLT1 AL109955.1 TRAFD1 YWHAZ SEC22C AC063949.2 SSPN OPN3 GSE1 XXYLT1 KDM2B SEPT9 STAG2 LINC01126 RASGEF1B DLEU2 AL159163.1 RNASE4 HOMEZ ST6GAL1 SWAP70\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RAD51B RMI2 LPP RERE AC010894.3 ETS1 ANKRD44 BACH2 MTSS1 BCAR3 ARID5B JARID2 RIPOR2 PALM2-AKAP2 MIA2 KDM2B IQGAP2 PIK3C2B CELF2 SETBP1 DUSP22 TBC1D9 MEF2C-AS1 CBLB LCP1 RASSF3 C1ORF112 MAP3K3 P2RY8 CD82 FOXN3 INPP5D IKZF1 SERTAD2 SGK1 ZDHHC14 ARID1B UMAD1 ATP8A1 TSPOAP1 TCF4 UBAC2 TG CDV3 EHD1 CYTIP VAV3 DLEU2 USP12 IL2RA STT3B CDC42SE2 USP6NL LRIG1 RFTN1 DOCK10 AC016831.7 ARHGAP25 BCL11A PCAT1 SLC1A2 ATP6V1E2 MYCBP2 BLK GNG7 HMGB1 LYN HOOK2 PNPLA8 AKAP13 LINC01588 ETV6 GLS UTRN AL136368.1 PVT1 SLAMF1 UBE2D3 ESR2 HDAC9 PLEKHA2 SMAD3 ARAP1 SLC6A6 RGL1 RHOH TRIO TNFAIP8 CHST11 RALGDS PATL2 IKZF2 EPS15L1 CXXC5 MIR3681HG DOCK9 TTC33 TBC1D5 SWAP70\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CLEC16A FOXP1 ZBTB20 HHAT HIVEP2 PLEKHG1 CIITA BLK ASAP1 ZDHHC14 SH3BP5 AC008014.1 EBF1 ITPKB TIPARP AC063949.2 RMI2 WWOX TMEM14B UTRN IQSEC1 PITPNM2 SNX9 SGK1 PDE4D C1ORF112 RNF44 CELF2 SYBU PLCL2 SELENOF TMEM131L EDEM1 AP000424.1 MACROD2 ITPR2 AC009126.1 TNIP1 KSR1 CCDC107 MTSS1 NINJ2 AL136962.1 BACH2 NFATC2 GNG5 DAZAP2 PPP2R5A CEMIP2 TFEB PRKCB CHST11 ATP2B1 TGFBR2 ADRB2 MARCH3 RASSF2 EFHB AL591885.1 COPS4 PPM1B AC004241.1 LMO2 AC007375.2 RPS6KA2 CXXC5 LY86-AS1 P2RY8 VRK2 TSPOAP1 PBX2 PRKAG2 ZC3H12D LMO4 MED12L RERE CYTIP LYST MEF2C ACSS1 UST ABLIM1 SACS C16ORF72 MTF2 DIP2B AFF1 UBE2E1 GNRH2 PNPLA8 KIF21B AL138720.1 ATXN1 CHD9 ST6GAL1 SLC22A23 CMTM7 JARID2 MOB3B AMN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 IQSEC1 ARID5B TSPOAP1 FOXN3 BACH2 RAD51B RUNX1 AC068896.1 CD82 LINC01588 CARS2 TNFAIP8 BCL2 LINC00598 LPP BLK ITPKB FAM107B ARHGAP25 ETS1 PAX5 PATL2 RAPGEF1 DOCK10 BCAR3 UMAD1 STK10 AC016831.7 GRK5 ZFP36L1 AMPD3 IKZF1 JARID2 ZMIZ1 PALM2-AKAP2 AKNA ARHGAP26 AKAP13 XYLT1 CHST11 EBF1 RMI2 NLRC5 B4GALT1 HIVEP3 AL138720.1 ANKRD44 EVL ATXN1 GAS7 SMAD3 LYN ST8SIA4 LIPA CELF2 INPP5D SETBP1 IL21R RIPOR2 TRIO LBH ST6GAL1 AC009126.1 ATG5 IKZF3 HDAC9 UST LINC02240 AC116366.3 CLEC16A PRKCB ABTB2 CCDC69 ARHGAP24 MEF2C WNT10A P2RY8 SSPN MBP RIPOR1 POU2AF1 NR4A2 CDK14 MAML2 PDE4B GNG7 WDFY1 CD83 SNX9 FOXO1 RFTN1 VOPP1 ANKRD33B HSPD1 UBE2D3 ELF1 LINC01185 AP000311.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 LINC01588 UBAC2 ANKRD44 FAM107B PDE4D P2RY8 LINC00598 CHST11 ETS1 SEPT9 GRK5 SETBP1 KLF13 DLGAP1 SMAD3 MYH9 ARHGAP24 TSPOAP1 TNFAIP8 RPS6KA2 LINC01126 AKNA GALNT2 TBC1D5 STIM1 CARS2 STK10 ZBTB20 SH3KBP1 RUNX3 RMI2 PREX1 LPP MAML2 ARHGAP25 ZFP36L1 AC010894.3 CELF2 ARID5B FOXN3 AC016831.7 NCK2 PPP3CA CRYBG1 PTPRC RHOG HLA-DMA B4GALT1 C15ORF53 SSPN FYN SPIDR SUPT3H CCDC88C AMPD3 PLXNC1 JMJD1C ST3GAL1 AC063949.2 ST6GAL1 MIR3681HG PDE4B MGAT5 RAD51B ZNF365 AC068896.1 SLC2A1 BLK BHLHE40-AS1 HIVEP2 HDAC4 TRABD2A WDFY2 LINC01135 MSI2 ARID1B ZDHHC14 ETV6 PLCL2 LIPA SAMSN1 ELMO1 SERINC5 TRPS1 ANK3 LCP2 ATOX1 GDI2 ATXN1 PLEKHA2 SLC6A6 HIVEP3 INPP5D HINT1 ST8SIA4 CMIP PAX5 NEDD9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 ARID5B CELF2 MTSS1 FOXP1 TGFBR2 LPP AC068896.1 AKAP13 TNFAIP8 BCL2 SMAD3 ARHGAP24 ETS1 BACH2 RUBCN XXYLT1 MEF2C-AS1 PRKCE MAML2 PDE4B IQSEC1 UBAC2 FAM107B HDAC9 ARHGAP25 TRANK1 P2RY8 ANKRD44 CXCR4 IKZF1 ADAM19 MIR3681HG TTC33 CYTIP RAD51B AC063949.2 GRK5 FOXN3 LINC00598 MCTP2 NLRC5 SETBP1 CYTH1 MAML3 MEF2C FLI1 LINC01126 HIVEP3 LINC01588 ARHGAP15 EBF1 TG NR3C1 AMZ1 PBX3 MARCH1 IQGAP2 HOOK2 RAPGEF1 PCAT1 ANK3 PRKCH NCK2 HECA SHISAL2A DENND1A DLEU2 MNT RFTN1 LIPA JMJD1C SEPT9 HIVEP2 ELMO1 ITGA4 AL035530.2 AC016831.7 ZNF395 LHPP AKNA INPP5D DOCK10 XYLT1 AC007384.1 BANK1 ZCCHC7 AC018647.1 PTK2B PCGF5 RASGEF1B LDLRAD4 MGAT5 PNPLA8 ZNF365 SGMS1 SSPN SIPA1L3 RASGRP3 ATXN7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 AC068896.1 KLF13 MBP RAD51B CHST11 ETV6 SETBP1 BCL2 LINC01588 RIPOR2 LPP CD82 ARID5B CARS2 CELF2 TGFBR2 HIVEP2 BACH2 BCL11A PRKAG2 UBAC2 AC016831.7 FAM107B FYN PTK2B NEAT1 LINC00598 RASGEF1B UST GRK5 MGAT5 ZFP36L1 RMI2 CCR7 MAML2 HDAC4 PAX5 TMEM131L FOXN3 SMAD3 SEPT9 SERTAD2 ELMSAN1 ANKRD44 INPP5D CD83 DOCK10 VOPP1 DUSP22 CDH23 ARHGAP25 AKAP13 ITPKB ST6GAL1 POU2AF1 CCND3 TCF4 UMAD1 XYLT1 B4GALT1 AC009126.1 CIITA ARID1B TSPOAP1 MTSS1 IKZF1 PLEKHG1 ETS1 BLK LRCH1 ECE1 LRRFIP1 PTPRJ DLEU2 PLXNC1 NFATC2 SEMA4D KDM2B LYN CDKN1B CAMK2D AL359710.1 UTRN IQSEC1 AKNA CYTIP ADARB2 GDI2 OSBPL3 TNFAIP8 JARID2 PLCG2 HIVEP3 SLC2A1 PRKCE NCOR2 PVT1 PCAT1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CCDC69 XYLT1 POU2F2 IFNGR2 TNIP1 PPP2R5C TNFAIP8 RUNX1 ACIN1 TSPOAP1 PIP4K2A PDE4B HMGB1 SMIM12 AMZ2 CTIF CXCR4 ECE1 ASAP1 KANSL1 AC063949.2 UBQLN4 LPP ATG5 AC068724.3 AC079610.1 PLAC8 MTO1 ANKRD44 ICAM2 LIPA ERI2 RPRD2 RASSF5 CHD9 RMI2 CAPN10 AAMP UBE2L6 NFKB1 ARID5B CREB5 PECAM1 FOXP1 METTL6 DLEU2 XXYLT1 KLF13 CAMK2D CMTM7 UST JADE2 LINC02391 CRYBG1 TRAK1 TMEM229B LINC00598 KDM7A RERE TBL1Y AC005091.1 ELOC C18ORF63 TTC32 EIF3H RAPGEF1 AC006449.6 AC011498.1 PLEKHM2 SDR42E2 IGHV3-33-2 RRP1 RBL1 BCL6 WWC3 EED GASAL1 IMMT TTI2 PARS2 MIR29B2CHG PLCD1 SLC6A6 PTPN1 PARVG DIP2C PABPC1 EMC9 BBX CBLB ADAT2 RAP2A RPS6KA5 ATXN1L CLEC2D ATP6AP1 XPNPEP1 GLRX5 SCAF11 TEC\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 EBF1 TNFAIP8 RAD51B OSBPL3 BCL2 IQSEC1 TSPOAP1 SEPT9 IKZF1 CCR7 CELF2 SETBP1 ETV6 PCAT1 ETS1 ATP13A1 FAM107B GNG2 ANKRD33B RMI2 RIPOR2 NLRC5 CCDC88C ZFP36L1 LINC00598 AC063949.2 ST6GAL1 ADAM19 STK10 LINC01588 MSI2 P2RY8 PLCG2 GLB1 CXCR4 CMTM7 TGFBR2 GALNT2 CSGALNACT1 MAP3K5 GNG7 AFF1 PATL2 MGAT5 EPC1 PALM2-AKAP2 RUNX1 CYTIP AKAP13 RASSF3 LY86-AS1 AC009126.1 KANK1 DSE TNS3 CHST11 PRKCB ZNRF2 PAX5 AC011773.4 RAI1 AC016831.7 ARHGAP24 CDKN1B B4GALT1 PIK3AP1 LBH PXK PIP4K2A BACH2 DNM3 FOXO1 MTSS1 ECE1 FGFR1OP MED12L TPD52 RABEP2 AC022182.1 NDUFAF6 MCTP2 CLEC16A SLC37A1 ITPKB VMP1 AL353616.2 PMAIP1 POU2AF1 ITPR1 RHBDD1 ACTR3 NDUFV2 NEAT1 TCF4 LRRC8C-DT PDE4B RIN3 MBP MAST4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B CHST11 FOXP1 AC068896.1 RIPOR2 ANKRD44 MGAT5 LINC00598 ETS1 RFTN1 PTPRJ AC016831.7 ATG5 MEF2C BCL2 AMPD3 FOXN3 LPP SLC9A9 GAS7 INPP5D FAM107B ARHGAP15 BACH2 RERE UTRN IL16 PCAT1 GALNT2 KAT6B MEF2C-AS1 CLEC16A HOOK2 JARID2 CCDC88C RASGEF1B AFF1 CARS2 BCOR UBAC2 ARHGAP26 MAML2 TRIO AC009126.1 RIN3 TBC1D5 PALM2-AKAP2 BANK1 JMJD1C ELMO1 METTL8 PRKCE SEPT9 SNX9 L3MBTL3 C1ORF112 TFEB CYTIP CCR7 ZDHHC14 RFX3 TNFAIP8 ZBTB20 HDAC4 B4GALT1 BLK AL390957.1 LY86-AS1 ST3GAL1 ABCG1 PLXNC1 OSBPL3 ARID1B SETBP1 TRIM14 COA1 SLC2A1 ARHGAP24 STK17B TSPOAP1 CHCHD6 PCDH9 PDE4B AGO2 LRRFIP1 ITPR1 AKNA LINC01588 JADE2 HLA-DMA ELMSAN1 SKIL MCTP2 REV3L HECW2 ITPKB ARID4B AL162377.3 TPD52 AC008629.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B BCL2 BACH2 TNFAIP8 LINC01588 HIVEP2 FOXP1 ATXN1 HIVEP3 RAPGEF1 ARID5B ACOXL AKAP13 ARID1B ETS1 NCOA7 SERTAD2 RFTN1 SLC38A1 FOXN3 ETV6 SEPT9 PIP4K2A RASGEF1B AC068896.1 MAML2 RUNX1 IKZF1 SPTBN1 SUSD6 FLI1 AHR RERE ZFP36L1 RASSF3 CELF2 AKNA MIR3681HG GRK5 BCAR3 RIN3 CHST11 MGAT5 MBP LPIN2 CD82 AL359710.1 UST ANKRD44 PAG1 UBASH3B ITPKB DNAH2 FAM107B GNG7 CCDC9 ELF1 PLEC LDLRAD4 LINC00649 SETBP1 RIPOR2 LBH ARHGAP26 PTPRJ LINC00598 MIR155HG RMI2 EBF1 CARS2 ADK LRCH1 ITK CDC42SE2 INPP5D HDAC4 LIPA ECE1 PTK2B HDAC9 STK10 ARHGAP25 AC008014.1 STAT1 RAB30 TSPOAP1 FYN SEMA4D UBAC2 AC016831.7 NLRC5 NEAT1 MYH9 NABP1 JMJD1C ARHGAP15 SKI RAI1 KAT6B NDUFAF6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 LINC01588 ATXN1 ARID5B ARHGAP26 LPP BACH2 UBAC2 HIVEP3 HIVEP2 MEF2C MYH9 AC068896.1 RIPOR2 PDE4B TNFAIP8 STK10 RUNX1 LINC00598 RUNX3 DOCK10 BCL2 LDLRAD4 FYN TBC1D5 FOXN3 CROCC MAML2 CHST11 AC010894.3 RHOF AKAP13 PIP4K2A RAD51B ETS1 TGFBR2 LCP2 INPP5D P2RY8 ZBTB20 CRYBG1 TSPOAP1 BCAR3 RFTN1 PREX1 NEMP1 EBF1 EVL FOXP1 AC009226.1 PVT1 AC006369.1 PATL2 CIITA RPTOR NCK2 TTC39C IKZF1 TRAJ28 ANKRD44 RREB1 DUSP10 ARSG CDH23 SSPN ITPKB PITPNC1 FLI1 JARID2 ZMIZ1 PPP3CA DLEU2 ITPR1 CDC42SE2 SH3BP5 PDE4D SPTBN1 PTK2B ATG5 MED12L PAG1 TRIO HLA-DMA GPR68 OSBPL3 ELMSAN1 CCND3 AKNA HDAC4 SMARCA2 TNRC6B PPP2R5C PHF19 TTC33 GNG7 AC093010.2 GFOD1 TRERF1 LFNG ETV6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 INPP5D TGFBR2 MIR3681HG CAMK2D CABLES1 ZBTB20 RIPOR2 LBH FOXN3 SERTAD2 ZDHHC14 LPP HDAC4 RAD51B BCL2 PPP2R5C SLC9A9 MBNL1 PATL2 IL16 LINC01588 IKZF1 ATG5 OSBPL3 FAM107B METTL8 AL390957.1 MAP3K5 RASGEF1B CBLB ELF2 UBAC2 TNFAIP8 ZNF532 RERE HDAC9 MGAT5 PLEKHG1 CARS2 EBF1 AL138720.1 BACH1 UMAD1 JARID2 HIVEP2 AC068896.1 SSPN ETS1 CDK14 TBC1D5 KLF9 CHST11 BTLA EPS15L1 DNAH2 SETBP1 AC010894.3 MAP4K4 ARID5B SLC6A6 MEF2C ZCCHC7 AC063949.2 POU2AF1 ITPKB TTC33 LINC01126 VIM-AS1 RAPGEF1 CYTIP RPTOR DLGAP1 AC093010.2 CDC42SE2 SMAD3 AKNA PAX5 NCK2 PPM1K XYLT1 LIPA MCFD2 BANP AC009126.1 GALNT2 CCDC88C C3ORF52 HOOK2 MEF2C-AS1 SNX9 ERP44 PCDH9 ST14 RASSF3 IRAK2 UST CELF1 SMARCA2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ARID5B KLF13 AKAP13 FOXP1 MEF2C AC016831.7 MAML2 HECW2 LINC00598 AC068896.1 BCL2 RASGEF1B MEF2C-AS1 UMAD1 GALNT2 NEAT1 LPP ETV6 RAD51B RUNX1 ETS1 RMI2 DUSP22 AMPD3 CD82 HIVEP3 PALM2-AKAP2 MTSS1 RIPOR2 MXI1 TBC1D5 MNT IKZF1 HIVEP2 SERTAD2 STIM2 P2RY8 MGAT5 EBF1 MBNL1 UBAC2 GRK5 JMJD1C CFLAR LYN CELF2 TNFAIP8 VOPP1 INPP5D IQSEC1 METTL8 DNM3 ANKRD44 PPP3CA AL390957.1 ZDHHC14 LINC02541 LPIN2 AC063949.2 SH3BP5 TAGLN2 ABLIM1 AL355512.1 TTC33 MAPRE2 HDAC9 SPTBN1 RIPOR1 ASAP1 RAP1A SMAD3 MAML3 KLF9 LINC01185 CFAP97 ARHGAP25 CYTIP AKNA TPK1 UBE2D3 RPS6KA2 AL359710.1 RERE BANK1 ESYT2 TGIF1 FYN MED12L XPO6 WNT10A SCARB2 ZNF800 CDC42SE2 AC116366.3 VAV3 ADARB2 CIITA CEP85L ITPR2 CCDC6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 UBAC2 FOXN3 PDE4B INPP5A RUNX1 TNFAIP8 ANKRD44 GRK5 HIVEP2 AC063949.2 DLEU2 CD82 BLK BCL2 IQSEC1 RASGEF1B ZBTB20 LINC01588 LPP LINC00598 MTSS1 PCAT1 ARHGAP15 SETBP1 AC016831.7 UMAD1 TMEM131L RAD51B AFF3 IKZF1 RMI2 ASAP1 AC068896.1 BCAR3 ANKRD11 PTK2B CHST11 CFLAR SGK1 ITPR1 ARHGAP24 ASTL ETV6 DUSP22 CBLB ZNF365 VAV3 RASSF5 OSBPL3 PRKCB ITGA4 XYLT1 DGKD UST LINC01358 PPP1R16B UBXN11 PAG1 PATL2 P2RY8 AKNA ELF1 LFNG ARHGAP25 BACH2 KLF13 RASGRP3 MGAT5 MYH9 ADAM19 MEF2C-AS1 MIR3681HG TBC1D5 RASSF3 MICAL3 AHR SUSD6 PLEKHA2 LIPA AMPD3 RHOH CDKN1B CD72 PRDM2 TRABD2A RBM15-AS1 PLCL2 LINC01135 ARID5B LINC01754 MAML2 C1ORF112 METTL8 TGFBR2 ISG20 ARID1B PLXNC1 NDUFAF6 HECW2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ANKRD44 DNM3 ZBTB20 RUNX1 ARHGEF3 FOXN3 SETBP1 MAML2 MGAT5 RIPOR2 PDE4B ARID5B ETS1 AKAP13 RARA CARS2 AC009126.1 SSH2 FYN LINC01588 UBAC2 MED12L ITPKB RAD51B ZNRF2 CBLB CD247 GDI2 STAT1 EBF1 UST RABGAP1L TLR1 PLCG2 VMP1 MIR3681HG LPP RMI2 NFATC2 PRDM2 ITPR1 CIITA OSBPL3 CDH23 IQGAP2 MACROD2 AL035530.2 HNRNPUL1 ATXN1 PDP1 ETV6 SLC38A1 PLCL2 SPTBN1 ELMSAN1 HNRNPA2B1 CASP8 MTSS1 CELF2 XXYLT1 ADK RASA3 METTL8 AP000787.1 FBXL17 NIN EML6 BACH2 VAV3 JAK1 ST6GAL1 LDLRAD4 B4GALT1 BCOR SNX8 FOXO3 RIN3 ARID1B KAT6B AC022182.1 ADAM19 VOPP1 STIM2 CD44 LINC00598 SH3BP5 RAPGEF1 BCL2 RASGEF1B RUBCN ARHGAP24 TBC1D5 CHI3L2 LAPTM5 ECE1 LBH BACH1 GALNT6 AL031599.1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 ARID5B RAD51B LPP CHST11 FOXN3 PVT1 RERE ETV6 ITPKB HIVEP2 MTSS1 AC068896.1 BCL2 RUNX1 AKAP13 UBAC2 FAM107B BACH2 LINC01588 RIN3 DNM3 PAX5 IKZF1 GRK5 SEPT9 MEF2C-AS1 LIPA RIPOR2 ATXN1 HDAC9 CELF2 TBC1D5 AC063949.2 TSPOAP1 SSPN UMAD1 MBP CARS2 ARHGAP15 RASGEF1B PLXNC1 VAV3 KLF9 CCDC88C ARID1B HIVEP3 PCAT1 CBLB ETS1 UST ARHGAP25 BLK CCDC69 MAML2 RREB1 AL359710.1 XYLT1 DUSP22 NFE2L2 ARHGAP24 MEF2C ZMIZ1 SMAD3 IQSEC1 RAPGEF1 ASAP1 PTK2B ZC3H12D LINC02240 KLF13 IRF2 ANKRD44 SPTBN1 AL138720.1 CIITA STX7 DOCK10 INPP5D ZBTB5 PATL2 PLCL2 PTPRC PDE4B ZBTB20 PRKCE ZFP36L1 PPP3CA SETBP1 ZCCHC7 RMI2 LFNG AC016831.7 CSK SAMD4A ZDHHC14 LRRFIP1 JARID2 ANK3 LINC01353\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B ANKRD44 SMAD3 LINC01588 RUNX1 DTNB SETBP1 AL138720.1 GRK5 TNFAIP8 SIPA1L3 VOPP1 C3ORF58 FOXN3 ARID1B PDE4B HDAC9 KLF13 FOXP1 ATXN1 LY86-AS1 RAPGEF1 CYTIP KLF9 ATG5 LINC00598 JADE2 ETS1 DUSP22 DAPP1 CD82 AC008764.1 PCED1B CARD19 HIRA IRAK2 NRL OSBPL3 VAV3 FAM117A PRRT2 TSPOAP1 CYTH1 KAT2B NKIRAS1 SSSCA1 IRF2 SH3TC1 STK17B POU2AF1 LINC02240 GLS AL159163.1 FAM107B ANK3 PLCL2 NR3C1 TGFBR2 ARHGAP26 MAML2 ELF1 CSGALNACT1 CDK14 JARID2 MTIF3 WNT10A PPP1CA PXT1 AL136295.1 AP000424.1 APBB1IP AC009226.1 AL445430.1 RPS29 C4ORF46 LIPE-AS1 PNPLA8 USP37 AFF1 CD164 VMP1 ST3GAL1 ACSS1 MBP RARA TG PRKCH ARHGAP24 SNHG15 PAX5 SNAP47 ETV6 AL355916.3 SLC45A4 CIITA MYH9 LRRFIP1 SH2B3 SLC16A7 TAF15\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: UBAC2 NR4A2 RAD51B FOXP1 IQSEC1 GRK5 TGFBR2 HIVEP2 ZMIZ1 GALNT2 MEF2C-AS1 FAM107B TNFAIP8 MGAT5 AMPD3 CHST11 RUNX1 CRYBG1 AC116366.3 PDE4D LDLRAD4 FOXN3 TBC1D5 CYTIP IFNGR2 VAV3 NRL BCL2 RMI2 IKZF2 CIITA NCOA2 IKZF1 TRAJ28 ZFP36L1 TRIO YTHDF3 TTC33 NRIP1 BLK INPP5A JADE2 ANKRD44 XYLT1 PLCL2 SYNE2 DSE PIP4K2A CD82 PPP3CA MAML2 FMNL3 LHFPL2 C6ORF62 UTRN CDK13 NEDD9 FAM19A2 SUSD6 MACC1 VOPP1 DARS ZNF33A ADAMTSL4 ATOX1 GCNT2 RIPOR2 TRIM2 ETS1 ETV6 SRPK2 NCK2 KLHL5 LPP MPC1 CLEC16A PLPP1 AC010894.3 MBP AP1S3 RALA AC090371.2 ITPR2 ELMO1 KLF7 PCDH9 MIR4422HG AC068896.1 TRANK1 NCOA7 ANKMY2 AC079313.2 TIPARP CCDC88C SOD2 AC027644.4 TAF1D ITGA4 HSF2 SETBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TTC33 GAS5-AS1 WWC3 AC008629.1 AC022182.1 PTPRJ RASGRP3 DRAM1 IQSEC1 STARD6 UMAD1 DNAAF2 DUSP10 RREB1 IQGAP2 USP6NL PDCL3 CDKN2C RIC1 TXK STK17A ARHGAP26 PUM2 LINC01215 DCHS2 AKT3 CEP290 RFX1 ANGPTL5 NCOA2 AL049844.1 BCR PPFIA4 NHSL1 CARNMT1 TRAF3IP3 C9ORF78 EEPD1 ASAP1 LINC01135 HUS1 ELOC AC118549.1 CCNYL1 PPP1R12A FHIT BMT2 MYB SP100 MACC1 GNG5 NT5C3A ZNF236 CHD9 TMEM245 BCAT1 PHLPP1 TNFAIP8 CGAS TBC1D8 AGBL5 NRP2 POMGNT2 NFIA JADE2 HIST1H3A PLEKHA2 ALCAM C5ORF51 UTP4 ARHGDIB EML6 GM2A LAP3 TCOF1 FUBP1 AC007381.1 UST AC026202.2 ALG6 FYN AC090061.1 MYO1G SPART MDC1 RASSF3 AC058822.1 AC007163.1 FAM111B AHR HTATIP2 PQLC3 RRAGB GTF3C5 LY86-AS1 DENND3 CSNK1A1 FLI1 ELMO1 ZNF638\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CELF2 ARID5B CABLES1 LYN LINC01588 BACH2 CHST11 FAM107B LIPA ETV6 UBAC2 HIVEP2 RIPOR2 ARHGAP15 AC068896.1 AKAP13 RMI2 HIVEP3 DNM3 LINC00598 ZBTB20 ANKRD44 MBP LRRFIP1 ARHGAP25 DUSP22 CBLB VMP1 AL359710.1 TNFAIP8 ABCG1 OSBPL3 LPP TBC1D5 AL031599.1 RUNX1 KLF13 AC063949.2 TGFBR2 DLGAP1 AL390957.1 EIF2AK3 CARS2 LDLRAD4 LBH IL16 KLF9 MAPKAP1 ADTRP RHOH ITPR1 OSBPL10 BLK UTRN HECW2 XYLT1 HOOK2 MSI2 VOPP1 FOXN3 ITPKB PDE4B RAPGEF1 CLEC16A PRKCB CCR7 P2RY8 CSGALNACT1 AC116366.3 AC016831.7 EBF1 RAP1A FNBP1 RPS6KA2 LY86-AS1 UPP1 ATXN7L1 CD86 RREB1 KAT6B C1ORF112 IKZF3 UST CDKN1B OSBP CLVS1 PCED1B ANKRD33B MGAT5 NFATC2 LCP1 CLMN IQSEC1 BRF1 ATG5 SCAF11 SETBP1 MAML2 CHD9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC016831.7 FOXP1 DNM3 CHST11 TNFAIP8 AKAP13 BCL2 ARID5B RAD51B IKZF1 SEMA4D MAML2 LINC00598 PATL2 AC068896.1 LIPA ANKRD44 ARHGAP26 ETV6 MIR3681HG HIVEP2 ARMH4 FOXN3 UBAC2 JMJD1C PTPRC CCDC88C PIP4K2A SCML4 GNG2 RIPOR2 ITPKB SERTAD2 MBNL1 MARCH1 AKNA PCED1B AC063949.2 MBP LPP PRKCH TBC1D5 ARHGAP25 CD82 ATG5 STIM2 CRYBG1 KLF13 ACTB NFATC2 ST6GAL1 VOPP1 PPP2R5C LINC01588 BACH2 ITGB1 AL450998.2 ABLIM1 AC010894.3 PVT1 HIVEP3 NCOA2 ARID1B EBF1 CDKN1B ZFP36L1 SNED1 RUNX1 TRABD2A AC009226.1 CKAP4 RPS6KA5 CMTM7 CCND3 RAPGEF1 FOXK1 RASSF2 PAX5 PRKCB TMEM131L AP000787.1 AL031599.1 ITPR1 DOCK10 PTK2B ZNF395 TFEB UST PXYLP1 AC084200.1 RMI2 STK17A NOP14-AS1 C1ORF112 BCOR AMPD3 RPS6KA2 EZR HIP1 CXXC5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RAD51B LPP RUNX1 UBAC2 ARID5B GALNT2 ITPKB FOXN3 RIPOR2 LINC01588 TNFAIP8 PAX5 ARHGAP25 HIVEP2 AKAP13 BCL2 UMAD1 ETV6 IQSEC1 CARS2 CD82 SETBP1 CHST11 MBNL1 CCDC88C MTSS1 TBC1D5 SMAD3 AC068896.1 PIP4K2A RIN3 ETS1 DNM3 NDUFAF6 CYTIP AL390957.1 ST6GAL1 PLCL2 RFTN1 ZBTB20 LDLRAD4 PDE4B ARHGAP24 CIITA TGFBR2 PATL2 AC016831.7 CELF2 MAP3K3 DOCK10 PRKCB ANKRD44 MGAT5 RMI2 LINC00598 CFLAR INPP5D PDE4D PLEC GAS7 PPP3CA KLF13 FAM107B BCL11A ELMSAN1 LYN TSPOAP1 RASGEF1B PCAT1 AKNA IKZF1 RERE AP000787.1 JARID2 ZNF365 UST NCOA2 CAMK2D ATXN1 FYN PALM2-AKAP2 CDC42SE2 RHOF MBP GRK5 SERTAD2 EBF1 LIPA OSBPL3 HVCN1 BACH2 SH3BP5 XXYLT1 HECW2 AL359736.1 ELF1 PAG1 ADAMTSL4 PTK2B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RAD51B MIR155HG BACH2 RUNX1 ACOXL FOXP1 PCAT1 RMI2 PVT1 ETS1 LPP RFTN1 ABTB2 ANKRD44 PATL2 AC016831.7 INPP5D ACTB SEPT6 ZBTB20 VOPP1 PLXNC1 LINC01588 IKZF1 HIVEP3 TRAF1 SAMD4A SERTAD2 XYLT1 ARHGAP24 TSPOAP1 MEF2C STK17B RIPOR2 NFATC2 EBF1 CDC42SE2 UBAC2 TNFAIP8 LRRFIP1 PPP3CA AC068896.1 UST TGFBR2 DNM3 TBC1D5 JAZF1 CD58 ITPKB ARHGAP25 HIVEP2 ATG5 GNG7 CLEC16A UBALD2 ELMO1 ST6GAL1 ARID5B DTNB NFKB1 SLC15A4 IQSEC1 MGAT5 MAML2 MAP4K4 ELMSAN1 AL359736.1 NEK7 CXXC5 PLCL2 FYN SPTBN1 CD82 NCOR2 BCAT1 IKZF3 CELF2 TRAJ28 EVL NEAT1 SMAD3 CDK14 ANK3 AUTS2 NSMCE2 ATXN1 RERE ZDHHC14 ECE1 BANK1 LRCH1 BCAR3 RAPGEF1 CHST11 GRK5 PRKAG2 PRKCB STK4 PAX5 SEPT9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ST6GAL1 LPP RFTN1 AKNA ITPKB LINC01588 HIVEP2 LDLRAD4 MTSS1 ATXN1 AKAP13 INPP5D TG ASAP1 GAS7 AC068896.1 SGMS1 CSGALNACT1 PNPLA8 IQSEC1 ST3GAL1 TSPOAP1 TBC1D5 UTS2B TRERF1 AC008764.1 ZEB2 FOXP1 ADAMTSL4 DLEU2 CARS2 RUNX3 SNX5 CAND2 MCF2L2 DENND3 MSI2 ATG5 SEC22C UBAC2 ARID5B VWA8 FAM49B LINC01137 ARHGAP15 DOCK2 DNMT3A SERTAD2 PRKCH DNAH2 AL450998.2 PVT1 CCDC88C AC008105.3 IKZF2 CAMK2D FAM117A TRPS1 ARHGAP25 GATAD2A ZFAT TTC33 ELF1 ANKRD33B RORA-AS1 RNF4 ARHGAP26 AC091114.1 SH2D3C TIMMDC1 HACL1 ARHGEF3 RAD9A TPRG1 IKZF3 LINC01126 RASSF5 PPP2R5C CBLB LINC01135 AP3M2 GATM TAOK3 PLEC CD82 PPP3CC ZNF367 USP32 SMAD3 TPD52 LINC01215 SPAG8 TRAJ28 AMN1 EPS15L1 ETFBKMT RB1 PRKCB CNOT3 JMJD1C\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "B", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RIN3 ARHGAP24 CELF2 SEPT9 ETV6 ITPK1 AL160408.2 RUNX1 IL4I1 AC006449.6 ANKRD44 AKAP13 SERTAD2 RAB11FIP1 FOXN3 GALNT2 VOPP1 RAD51B FOXP1 RIPOR2 HIVEP3 CDK19 HK2 CDH23 ELMSAN1 TNFAIP8 LPP RAPGEF1 IQSEC1 ITPR1 MED12L FKBP5 ITPKB XXYLT1 TSPAN14 LINC02240 TNRC6B MSI2 HLA-DQA1 CUX1 TGFBR2 BMF SRP14-AS1 DOCK10 AC013270.1 ARHGAP10 ATXN1 RPS6KA2 TCF4 MYH9 AC068896.1 TSPOAP1 BHLHE40-AS1 MBP AC016831.7 SGK1 ELMO1 AL390957.1 HDAC9 TBC1D5 UTRN AL162377.3 LINC01588 CCDC12 CCDC88C FBXL12 BACH2 AUTS2 ARMH4 FYB1 AC069368.1 IKZF1 FLI1 MICAL2 MACC1 MAML3 MGLL SH3KBP1 CHST11 FAM129A SPTBN1 VAV3 HECW2 SUSD1 AHR ZNF710 MED13L AHNAK ASAP1 PPCDC GSE1 RARA BCL6 RGS12 CCND3 PRR5L NSMCE1 GPR68 SLC39A10 CYTH4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZBTB16 VMP1 ZMIZ1 MTSS1 RUNX1 NFE2L3 STAT1 RIN3 TNFAIP8 AL390957.1 LCP1 FOXP1 AUTS2 PVT1 PRKCB ATXN7 AHR GLS SMAD3 ARHGAP15 AKAP13 NCOA7 GSE1 ST6GAL1 CELF2 IER5 DST BCL2L1 RAD51B CEP85L VAV3 E2F3 KIF2A ARHGAP26 IGF1R CDH23 ANKRD44 DIAPH1 H3F3B ERI2 PPP3CA ATP8B4 CDC42SE2 ZNF846 SERTAD2 PRR14 SRF FAM19A2 MAML3 PDE4B CHST11 TBC1D5 TSC22D1 UTRN STK10 MCTP2 ARMH4 MSI2 RMI2 AC008014.1 CDK6 DLGAP1 ECE1 FBXW7 PLCL2 PPM1L ASAP1 ZC3HAV1 AAK1 PHF19 TSPOAP1 MIR155HG KSR1 DUSP10 ESR2 EBF1 ITPR1 AL451062.3 SH2B3 HMGB1 IQSEC1 ETV6 RREB1 C9ORF3 KAT6B AC069368.1 TNS3 PCGF5 HOOK2 MAST4 AC093827.5 FBXO11 STON2 CUX1 LONRF1 HOMEZ NSMAF LINC02384 AL591885.1 IQGAP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DYRK1A ZFYVE28 SLC35F5 AC023055.1 TSKS ZNF217 GATAD2A ZDHHC5 RBM14-RBM4 AC011498.1 AUTS2 TREX2 IL2RB AP1G1 ANKMY1 YWHAZ PAXBP1 GUCD1 MPV17L2 RBM15-AS1 SGO1 CA5B MLLT3 SQSTM1 ZNF384 PRKCZ ZNF668 GSK3B HERC4 SARNP GAL3ST3 ZSCAN10 CDV3 EXTL3 RRP9 CDKN1B TRERF1 TBC1D10B FOXP1 PFKFB4 SRSF11 DIABLO UBR2 MARK2 SH3GL1 PIP5K1B TIAL1 ZNF540 ARAP3 NR1D1 RBL1 HSPB11 AP005329.2 EIF3J-DT PPP3CA ZNF574 TMED4 LUC7L INSIG1 TPK1 AL139246.3 CSNK1G3 CNOT3 LINC01135 NSD1 TECR ZXDC ERI1 AC011481.2 RAB26 MCOLN1 AZIN1 PIM1 SH3KBP1 PTBP1 NQO2 GSK3A KDM7A AC092723.5 FARSA SLC11A1 FAAP20 NRDC SNRPN GNAI2 TPRG1L GTF3A MKNK2 FOXO6 ACTB NTMT1 AL603832.3 ZNF547 XRCC3 RAP2A BAIAP2-DT PIGX BCL9 TUBB4B KLC4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP FOXP1 MAML2 CIITA CDK6 SETBP1 ITPR1 HIVEP3 RIPOR2 SORL1 LYN RPTOR SYNJ2 RUNX1 CHST11 ARHGAP26 RPS6KA2 LINC01934 PRR5L MAML3 TPRG1 BCL11A ATXN1 DOCK10 TAOK3 FYB1 MACF1 HDAC4 GNAI2 ZMIZ1 GRK6 VASH1 JARID2 HECW2 LDLRAD4 PDE4B IGF1R ASAP1 AKAP13 TNFAIP8 AC058822.1 NCOR2 MBOAT7 TRAK1 SLCO3A1 UXS1 ETV6 CCDC88C CPVL RASSF3 MEF2C CDH23 ZNF395 OGDH ZCWPW1 AUTS2 AL138720.1 AMPD3 PLAUR PACSIN2 ANKRD44 CD82 AC004540.2 RFX1 PATL2 AC016831.7 FAM129A AC010894.3 PVT1 XYLT1 NEDD4L HIVEP2 HIST1H2BC LINC00589 MLLT3 CATSPERG CARS2 LPXN MREG ACVR1 TTC33 MIR3681HG MCF2L2 ARHGAP10 FHIT TXNRD1 PTPRJ EXT1 TRIO AL390957.1 E2F7 SKAP2 SMIM35 LIPA ZBTB8OS TBL1XR1 CYTIP KIAA1551 CXXC5 PPP3CA\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: GTPBP6 ZNF846 PLAUR RPL36 HNRNPU METTL23 AL158152.2 MATN1 ZNF213-AS1 CFL1 PDIA6 AC008014.1 ACAA1 SEC31A CIC AIDA NHP2 SNRPD2 KCTD9 SETD3 ALDH6A1 CCDC61 EEF2KMT AC008440.1 SDE2 SIN3A RPS12 ADAMTSL4 HOOK2 DNAH2 RMI2 OXSR1 PTPRE MARCH2 GPR108 PATL2 TESK1 KAT6B INO80B SPAG9 THRAP3 STIM1 HADH SEC14L1 LMF1 HLA-DMA NAIF1 ATP1A1 LINC01004 PSMA5 U2AF2 STAT3 FAM214B GADD45B GAS5-AS1 LINC00265 ENSA KLF13 DUSP23 ZBTB24 SAP130 MPP7 NAT9 MLEC CBX8 IBA57 RIC1 ARNTL EIF2AK3 GMFG AC243960.3 CBX5 ECSIT STK10 AC009226.1 APLP2 AC010271.2 HNRNPL NFE2L1 TMEM30A CCNE1 SLC25A42 RBM15-AS1 AC090617.5 MARCH8 RNF167 MAP2K3 PER1 SLBP PTRH1 IL1B PSAP AL669918.1 ZBTB17 PAIP2B VPS26C CDC26 STAT1 MRE11 CARS2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: NEAT1 CYTH1 LFNG SEPT9 LINC02384 EHD1 GRWD1 RARA ST8SIA6 ACY3 LINC01973 AC119396.1 RCC1 CYB561A3 KCNMB4 IL4I1 ADIPOR1 ZCCHC14 ESRRA ING3 NRL ABCD2 AP002358.1 CROCC CORO1A HNRNPUL2-BSCL2 CNFN WDR74 AP001453.2 CIC AC025159.1 CLK3 LSS AGTRAP WDR26 MAPK8IP3 RPTOR TRNAU1AP TNRC6C AP000769.3 PYGM AC097713.1 GCC2 SSSCA1 ITPR3 CLEC7A DDB1 TMEM134 RPL13A CASZ1 PCGF5 LPP MITF CEMIP2 HSF2BP CTSH AC006486.1 BCL7C MNT DRAXIN CTF1 CDC16 PRKCE LIPE-AS1 AC243960.1 ADCK5 ANKRD11\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TNFAIP8 GPR68 NLRC5 FNDC3B ZBTB20 MCUR1 AHNAK CGGBP1 ITPR1 IQSEC1 EIF2AK3 MYH9 AC009126.1 CAGE1 PRKCH ARID1B ARHGAP26 LINC02356 AL160408.2 SLCO3A1 GADD45A CXORF40B FKBP2 ZNF592 KIF2A AL109910.2 SMAD3 RDH14 EVL SPDL1 LINC01336 ZNRF2 TRANK1 RAP2A MRPL24 ZMIZ1 TC2N FLI1 DUSP10 TLDC1 PCAT1 AL390957.1 ANKH ARL2-SNX15 MAP3K3 SIN3A AC061992.1 JOSD1 IGF1R DNM2 IL4I1 CD247 HEXIM1 NR4A2 CARS2 KLF7 CD96 PGAP1 RAPGEF1 AC020743.2 AC012184.1 MXI1 SMG6 FYCO1 KLF5 KIT RAB7A MIPEP LPCAT3 AC068896.1 C1ORF123 UBAP2 CRADD ZDHHC20 AL451062.3 PACS1 MBD1 FAM13A KLHL21 CIP2A ELK3 WDR78 KIFC1 ACTB LINC00299 CDC42SE2 AP000282.1 BBIP1 ATXN7 DPP8 SUMF1 PPP2R5E BCL9 GRAP2 PIP4K2A NOL4L RFFL BAP1 SLAIN1 PCGF5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CASP9 U2AF2 ZNF511-PRAP1 EXOSC4 MKNK2 ZBTB45 SLC5A10 FYN ASCL2 KPNA4 HOMER1 LRRIQ3 TRIB1 UBAC1 ZNF615 BMPR2 KNOP1 BBC3 ATOX1 C1ORF43 CIRBP-AS1 AC034102.4 TNFRSF12A PTPRE CARS2 P4HA2 RHEB NAA50 HOOK2 PHF8 PNKP RBM14-RBM4 CLK3 DOHH FHOD1 LINC02352 GTF3C1 METTL21A FLYWCH1 IRAK2 CSNK1A1 ZBTB4 TAF4 RASGRP2 FAM129B PIAS2 PLAUR MAN1B1 BX640514.2 MED22 SKA2 CREBRF CNOT10 RPS6KA1 FANCA GSPT1 XPO6 AC005808.1 ASB6 AC003002.1 AC008060.3 HMGN1 C19ORF54 TMEM256-PLSCR3 STK25 PARVB SLBP DOLPP1 AL121890.5 PDIA4 CSNK1G2 SCGB2B2 CLCN3 CCND3 TBC1D32 WDR59 LRRC29 ULK4 AC131097.4 ICE1 MAP2K3 TRAF2 BDH1 MTO1 KCTD21 MPV17L2 ANAPC4 CDIP1 DENND5A GPR157 IL6R SDF4 AC012309.1 HCG27 MANBAL ANKRA2 LSR LINC02288 RCC1 GMNN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PLSCR1 ATXN1 CFL1 ERCC1 KCNN1 SIPA1 HEG1 NFKB1 CRADD PER1 LINC02001 RAB8B CARS2 LINC00111 SUN1 KCMF1 SESN1 LINC01431 NARS VPS37B DENND5A GATAD2A ANXA2 FOS MKL1 FCGR2A DAGLA GPAT3 EEF2 LINC01778 AL928654.3 PELP1 SVIL CRTC2 BAZ1B GRHL1 NAPA AC008897.2 HIST1H2BN AC099552.3 MAN1B1 PRDM8 ERICH1 SHISAL2A SQSTM1 EIF2AK3 PFKFB4 LRTOMT RACGAP1 POLG C19ORF84 ATG13 CREBRF ICK ZNF77 JOSD1 PLCB1 SLC37A2 GSE1 HSD17B14 ARHGAP26 FOXN3 POR AL451062.3 CARD19 ASF1B N4BP1 ZMYM5 STOM RELT SH3PXD2B NOLC1 RHOG CD53 RASSF3 AL031283.1 KLF13 SYNJ2 ATXN2L BIRC2 MXD4 RNF7 MICAL2 KCNQ1 SETD3 ATG9B SNAP47 KIF18A ESCO1 SRM COX8A GAB2 ESPNL ELL VNN2 FUBP3 NME7 PVT1 BEST1 NDUFS7\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HOTAIRM1 PAQR9-AS1 EIF1 RARA AKAP17A KLHL15 RPS6KA5 SETBP1 RASGEF1A DYNC1H1 CKS2 CPD IKBKE PAX5 CCNT2-AS1 CAMSAP1 EFNA1 EPN2 RB1 GSK3B PATL2 AL590004.4 GPR3 ELOA-AS1 TIGAR AC068724.3 FAM171A2 ITK HIST1H4J LINC01220 STOML2 ARMC2 LINC02482 MAX NEDD4 ELMSAN1 AL031985.4 HIST1H2BM TMEM110-MUSTN1 TUBD1 ALKBH8 HIST1H4K LMF2 CDK14 MTMR4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC117394.2 RAPGEF1 RUNX1 ACTB HIVEP3 CHST11 MED12L ETV6 AUTS2 KLF9 BCL2 BHLHE40-AS1 AL355512.1 ANKRD44 ZFAT IQSEC1 CELF2 AL136018.1 IKZF1 AC016831.7 LINC01588 RPS6KA2 ECE1 ITPR1 ZC3H3 ATXN1 ARMH4 CBFA2T3 MEF2D TBC1D14 HIVEP2 TSPOAP1 MIR155HG RIPOR2 KLF13 UBAC2 RASSF5 AKAP13 LPP PALM2-AKAP2 FBXL19 LMNA NADK2 MAPKAPK2 ST3GAL2 CFL1 LPIN1 BMF TBC1D5 MBP INPP4A AHR FOXP1 RRBP1 LINC01004 CLEC16A FOXN3 FHIT MGLL ZBTB4 P2RY8 CD74 SH2B3 CASP8 MACF1 ACOXL THEMIS2 PPP2R5C LINC00265 ELF2 PLEKHA2 IRF2 TLCD2 BANP AFF1 GAB2 PRKCB ASAP1 STK10 UBE2D3 ZEB2 RFTN1 LYN RARA DOCK8 WNT10A MPEG1 RIN3 GALNT2 NEDD9 ENTPD1 SLC2A1 ELMSAN1 ARHGAP26 NEMP1 NFE2L2 GPR68 FHAD1 VOPP1 GSK3B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 FOXP1 ZBTB16 NSMCE1 FADS2 FOXN3 CLASP1 KLF9 ARHGAP26 E2F3 MBP TGFBR2 HOOK2 SP1 MTSS1 SLC8B1 TNRC6B SIN3A CIC AL136368.1 PRKCH VCPIP1 FOXO1 CHST11 ETV6 SMARCA2 CELF2 IGF1R JARID2 ZBTB20 CXORF40B PTMA PNKP PLEC MAML3 PPFIA3 MTMR4 AP000787.1 AUTS2 PPP3CA IL12A-AS1 ITPR2 TUBA1C RAD9A MED12L RAB26 CORO1C ELF2 JMJD1C ZNF395 RASGRP3 CACYBP ALG1L2 CCND3 RFX3 ELOF1 RAP2A ELMSAN1 TMEM53 TTC39B HNRNPUL1 UNC45A AL359736.1 TSPOAP1 AL160408.2 AC010894.3 SEMA4D AC008014.1 CGGBP1 DOCK8 BCOR CDK6 LMNA RPS6KA2 DDAH2 SMG6 LIPA BCAR3 ZNF644 ECE1 CCNG2 FAM83E PROCA1 ZBTB4 EP400 ST6GAL1 SYTL3 LRRC20 KAT6A NEDD4L PRDM10 COMMD3 SCUBE1 PRUNE2 RIN3 FOXO3 KDM4C GSK3B NEMP1 LPIN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 PRKCH UBAC2 ZFP36L1 RAD51B BACH2 CARS2 SERTAD2 SP1 AKAP13 YWHAZ ACTB AHR MIR3681HG MGAT5 PREX1 NCOR2 SEPT9 BCL2 TAB2 MAML2 TNK2 LPP RB1 GASAL1 EEPD1 CCSER2 CYTIP RNF125 PRKCQ ARHGEF3 LINC00299 PTK2B EPC1 STAT1 TLE4 FOXP1 TBC1D5 UBE2D3 AC004922.1 INPP5A FGD6 MAP3K5 TSPOAP1 MBNL1 TSPAN5 IL4R BHLHE40-AS1 ST3GAL1 P2RY8 PIP4K2A ZYX ARMH4 DOCK8 UST SLC1A5 SNX30 JARID2 CHST12 PIK3R1 BBIP1 C6ORF62 CBLB HIVEP2 TOX2 RASGEF1B CMSS1 HIVEP3 PPP3CA BPGM ZFPM1 HIP1 RGS6 STOM BISPR STK17B ARHGAP26 DNMT3A RBM12B LIMS1 PVT1 HMGB1 DNM2 SLC7A1 ITGAE TNRC6B TGFB1 ABHD2 CCND3 CCDC88C ERCC1 SOD2 DDX3X TMEM150B SIAH2 FAM49B PDE4B FBXL12 ANKUB1 PABPC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 CSGALNACT1 LINC01588 RUNX1 HDAC4 TNRC6B UMAD1 FAM117B PPM1B CEP170 TCF7 EVL ARHGEF3 ARHGAP15 IGF1R NFE2L3 NFKB1 ASAP1 RIN3 KPNA3 ZNF831 CCND3 ARHGDIB ARMH4 ITPR1 MSI2 MAP4K4 CIC ARHGAP26 LEF1 CDCA3 KLF7 C1GALT1 SIN3A ARID1B HBS1L OGDH FAM107B BID ACTB ABTB2 LSM4 BCL2 FSTL3 ASB2 ELMO1 PLEC TNFAIP8 SESN1 ASXL1 ELL ANKRD11 CORO1A ARHGAP10 TLDC1 SPTBN1 PRKCA TSPAN14 PRKCH PCAT1 WWC3 CBFA2T2 SUN2 ACTR3 IGFBP6 NEMP1 TOMM70 PHF21A RIPOR2 AL359710.1 ALOX5AP MYORG SERTAD2 VRK2 MYO9A MSN DUS2 GALNT2 ARPC5L JARID2 PPP2R5C LFNG DOCK10 PTPRK MIR3681HG MCM9 CDH23 LCP1 NEDD4L DLG4 NFIA SCML4 RNF216 CPEB4 STK17B LTA PCSK5 AC022706.1 APBB1IP PPP1R12B\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZFP36 RAB3D AL592071.1 SENP3 PNKP IQCN RAB8B ACTB CAMTA1 AD000671.3 MBD6 RABEP2 MIDN MBOAT7 SOD2 PPP1CA C2ORF76 MAMSTR FIZ1 FOPNL TECR C14ORF93 AC004923.4 TMEM256-PLSCR3 CIC PLIN3 TAGLN2 PTMA RASA1 ZBTB20 SAP130 NR1H2 AC022217.3 UBALD2 STK40 LENG1 ZBTB5 TUBB4B DOCK4 DENND2D DHRS1 MKL1 CBX5 EIF4G2 ALG1L2 SMAD2 DLEU2 HMGA1 PPCDC AL138720.1 ADRB2 SERTAD2 AVPI1 SLC43A2 SNHG8 AL049869.3 TUBA4B MXI1 CXCL2 SEC14L1 MED30 CASP9 WASF2 LINC00471 SKAP2 USP42 SELENOK MMS19 PPP6R3 MCM7 ZFP41 GTF2A1 NIFK LARP4B BLVRB AL928654.3 SETD3 GRK6 LRRC23 DCUN1D4 CARS2 FAM214B TPMT PER1 DESI1 MKRN1 AC093512.2 RSF1 SMAD3 RAPGEF1 CCDC151 TAF15 CORO1C SF1 GADD45B CRADD APTX CIPC RBM15-AS1 SESTD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: EBF1 ITPKB TNFAIP8 UBAC2 PEBP4 XYLT1 CIITA ADAM19 NR1H2 POU2AF1 RMI2 JADE2 BRD4 ARID5B LPCAT1 UBA3 SLC30A1 CAMK2D STX10 FAM107B SMAD7 PAG1 PIP4K2A PRR5 KCNQ5 ZNF608 FGFR1OP CDK19 CARS2 CHIT1 AC009126.1 CNR2 PCAT1 DTX1 JMJD1C RFX1 LDB1 TGFBR2 TRABD2A SEPT9 PVT1 EGR2 GRK6 CROCC MYH9 MEF2C-AS1 RAPGEF6 DNM2 RNF44 KCNIP2 CHST11 SH3GL1 HIVEP3 LINC01841 PIK3R5 LRCH1 GRB2 ZNF365 BLK SMAP2 SVIL SPATA48 IL6R LDLR IQSEC1 CYTIP PKIG CDC37 RAP2A DCP2 HOOK2 GGA2 GATAD2A SMARCB1 TECR PTPN6 HNRNPUL2-BSCL2 LAPTM5 FAM78A LNPEP LINC02068 OIP5 MTSS1 AC022182.1 DIDO1 TIFA LSM4 RFTN1 AC009779.2 CLEC2D ATG5 MARCH1 HNRNPDL IQCN SGMS1 LYN TOX MAN1A1 EPS15L1 PIK3R2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: RUNX1 CELF2 LINC01588 PDE4B CCND3 LIPA CHST11 KLF13 LPP ARHGAP24 ASAP1 ST3GAL1 PALM2-AKAP2 AC004922.1 BCAR3 TRIM14 FOXP1 CSK TBC1D5 ANKRD44 RHOF HIVEP3 MBNL1 LINC01135 IQGAP2 ZFAT ETV6 MAML3 MACF1 FARS2 CCDC88C GATAD2A AL390957.1 FYB1 DUSP22 LINC02356 RASSF5 CFLAR TCF4 JARID2 RASA3 FKBP5 FOXN3 PACSIN2 KDM4C UTRN SH3TC1 RAPGEF1 AFF1 THADA AC068896.1 EXT1 IQSEC1 RHBDF2 AUTS2 JMJD1C ANP32A NAIF1 AL160408.2 CHST15 HNRNPUL1 ARHGAP22 PIP4K2A SLC2A1 CDC42SE2 MEF2C-AS1 RUBCN LYN C3ORF58 OGDH MGAT5 STK10 ST6GAL1 FRMD4B TDRD3 ATXN1 RPS6KA2 IGF2R MBP ARHGAP15 PFKFB3 TECR LMNA AL138752.2 ITPR1 ZDHHC14 ARMH4 UBAC2 TRIO RIPOR2 ACTB WNT10A FGFR1OP MIR155HG KLHL21 AKAP13 TRAPPC9 ELMSAN1 GPR55 DNAJB14\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HDAC4 UBAC2 CD247 BACH2 XPO6 SEPT9 KLF13 ETS1 FOXP1 TSPOAP1 SDR42E2 RHOF ITPKB PAN2 LPXN HNRNPL CDC42SE2 MED12L PRKCQ BCL2 CD6 CTNNBIP1 P2RY8 MXI1 INPP4B RIPOR2 RUNX3 HECA IL2RA MNT ATXN7 RPS6KA2 WWC3 AC068896.1 EVL CCDC9 HBS1L PRKCH SCML4 ANKRD44 PDCD10 PCED1B MPRIP MAML2 RUNX1 LINC00598 CASP8 STIM1 BCL11B CMTM7 CKAP2L ARHGEF3 ELK3 PRKCB MBOAT7 KAT6B AL451062.3 LEF1 GFOD1 NOSIP ARHGAP25 PITPNC1 ZNF628 ELL ST6GALNAC3 CNOT3 UBXN11 PTMA LINC00355 SMYD4 MYH9 PAG1 HNRNPUL2-BSCL2 PLCL1 MBP PITPNM2 GRK5 FAM107B LYPD3 MOB1A SLC25A42 RAB27A CCND3 TBC1D5 LAPTM5 PRPSAP2 APBA2 FOXO1 TCF20 UBE2I CCDC61 CELF2 WBP2 IKZF1 TC2N ARAP1 ITK NEMP1 WNK1 TPP2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: KSR1 OSBPL3 AL008626.1 HECW2 ETV6 RPS12 NBPF1 MIR34AHG HNRNPA2B1 ZSCAN26 FAM118A AC022826.2 C9ORF3 ALDH1B1 BOD1L1 SOD2 ATOX1 TBC1D10B MBTPS1 DNAH14 TMEM131L GOSR1 UBE2D2 RALGAPB SGMS1 PCGF5 BEND3 ARID1B NCAPD2 AC019131.1 GPR160 MAT2B GAS5-AS1 CROCC RNF4 NCOA2 FAM85B SUSD4 NDUFC1 PINX1 CEBPZ SH3TC1 C4ORF46 COX7C MYO7B MTERF3 BAP1 LBHD1 ZNF273 PPP4R2 KLHL24 TSPOAP1 MAP3K12 C9ORF72 SH3GLB1 DUSP22 USP34 ASB8 CUX1 HOPX RFX2 AC005899.8 CUL1 RAD51B ZMYM2 PUS10 LETM2 SMARCD1 AC073934.1 RABGAP1L PRKDC IFT22 MCRIP2 AL355472.4 GPR68 ULBP3 LDLRAD4 ANXA6 IFIH1 HIVEP2 ZBTB38 AC021678.2 SMARCC1 PARP15 RAPGEF1 ITPR1 C16ORF87 CLYBL ARMC2 CFAP53 AC008937.1 CNNM2 DSTYK LINC01607 TTC33 KDM8 EIF2AK3 RBBP7 PIGA KDELC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AC083805.1 LINC01588 AC005224.2 TMEM189-UBE2V1 AC008440.1 LYN AL157935.2 LPP SLC25A17 RPTOR NBN RECK FAM107B DRAIC SPRY4-AS1 STAG1 MIDN SLC2A1 AFAP1 HIVEP2 SUN2 AC003002.1 NLRC5 KLF10 ATF7IP UBAC2 RPS19 AL390957.1 SDR42E2 AP000787.1 STK17B AL031283.1 VPS9D1 TYW1B EIF2B2 CDYL2 BAHD1 PREX1 CLN5 AKAP13 LINC01353 ADRM1 DAD1 TIMD4 TSHZ1 POLE4 ZNF398 LINC00324 ZNF511-PRAP1 C17ORF53 PCGF5 LTBP2 AC090049.1 DST XRRA1 FAM13B ASCC1 ZDHHC14 ZSCAN5A KDM5A EHD1 AL450326.1 POU2F1 PIK3R1 ZNF692 FBXL5 EPG5 GBP4 EXTL3 GTF2I ZFR CSK CDC37 SETBP1 ARL4C AC024909.2 AL023755.1 KAT6B ZBTB25 C6ORF62 FRMD4A RUNDC3A-AS1 SPRED2 UBIAD1 TRAPPC8 SUV39H2 RHEB ZNF76 MCAT PARP9 TNKS GDPD1 RBBP6 ETS1 ZNF683 C1QTNF3-AMACR APC AC012615.5 ROCK2 FAM32A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MNT HLA-DMA MIDN SOGA1 KCTD9 PHF12 HNRNPL APEH PDLIM7 ZNF18 AC015813.3 MXI1 KIF3C IQSEC1 TXNDC16 PGK1 GADD45B PRKRA TMEM222 ZBTB21 ZCWPW1 CARD19 PTPRE PLEC PNKP RAB4B-EGLN2 FLNA DDB2 FANCB CAMTA1 ELL DVL2 KRI1 TBC1D10B Z84485.1 MDC1 CCNH RABEP2 EME2 PHLPP1 DDIT4 SDCBP MKNK2 APBB1IP RRM2B TRIM45 MCAM ERCC1 AC027644.4 IQGAP1 AC069368.1 BBS9 MOSPD3 ZNF250 H3F3B IMPA2 IQCN LINC01137 AL392046.1 AL035420.3 LINC02569 TTYH3 SH3PXD2A NDUFAF3 C5ORF15 ZNF638 POLR3D NEAT1 PATL2 PPP1R10 HLA-E FNBP1 TNPO3 TCTN3 MARCKSL1 RECQL PWWP2A GATAD2B DONSON PDE4A SIN3A ARID5B C3ORF18 PITPNM2 ZC3H15 MAPK8 TMPO DNLZ SET SELENOK GDF9 CCL25 STIP1 POMT2 AC007192.1 TIPRL LMF1 ICE2 BNIP3L ACTL6A\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AKAP13 UBAC2 FYN MYH9 RUNX1 PRKCH CELF2 ZBTB16 IKZF1 MBP CHST11 NEAT1 MYO1D ANKRD44 TRAJ28 CCDC88C RORA PPP2R5C RIPOR2 NEK7 AC016831.7 ITPKB ELL RNF216 MSL2 DIDO1 ITGB1 AC009126.1 ETS1 LINC01004 PIP4K2A AL356234.2 HDAC4 GRK5 ATG5 IQSEC1 RARA SEPT9 HIPK2 EVL BCL9L ACTN1 MIR3681HG MGAT5 TWF2 AHNAK LTA LINC01588 AMZ1 PITPNC1 MED15 ZBTB7B ASAP1 CAPZB ST3GAL1 PDE8A ABLIM1 SLC16A7 PIGV RPTOR HPCAL1 ZNF846 ARHGAP10 SRBD1 ACTN4 ZMIZ1 DLEU2 XKR6 DLG5 STAG2 PCAT1 TRIM27 EPS15L1 DOCK10 POLR1A TPM4 TRERF1 NRIP1 IFFO2 CD55 STAT1 NSD2 PTTG1IP P2RX7 CACYBP IRAK2 RAPGEF1 TNRC6B OSBPL8 ATP6V1G2-DDX39B THRAP3 ZNF22 DSCAML1 AC008105.3 ARMH4 UCP2 MARS PRR5 EFHB ZPLD1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: USF3 MYO1G ARID5B CCDC12 MAP3K14 MYH9 PARP11 PRKAG2 RASGEF1B P2RX7 SEC23B RRM2B LPAR3 ATXN7L2 MSC-AS1 RGS6 CACTIN SLC25A42 AC009133.3 UNC45A RPS29 C1ORF112 AC015813.3 ARMCX6 SEPHS2 GGA2 ANXA11 PGRMC2 ZNF746 EBPL AL627171.2 SLC39A8 FARP2 AKAP13 RUNX1 DUSP13 IQGAP1 TNFRSF18 FADS2 WDR87 SIAH1 IL12RB2 SSH2 AKIRIN2 BICRAL LINC00893 TMEM192 ADSL GPATCH4 INSC SPATA6 SLAMF1 ADCY7 INTS3 C19ORF48 MBIP MPHOSPH8 RALY GLUL CALCOCO1 CEP170 NAA16 TTBK2 GAPLINC PKN2-AS1 DAGLB NEIL3 CENPF DTNBP1 SREBF1 PEAK1 TMEM129 TARS2 AC138811.2 FCMR ERCC1 SDS RNF167 AC006449.6 FYN RNF170 HAUS6 AP002358.1 AL137005.1 ARMH4 AC080129.1 LSM12 BRD3 EXOC2 SGMS1 DDB1 AC020915.5 COG4 SH3RF3 CCDC26 ZSCAN2 MFSD6 SNX9 CTNNA1 ABCB9\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SMAD3 MBP AKAP13 BCL2L1 HNRNPUL1 SLC38A1 RBPJ GRK6 RUNX3 PITPNC1 NOL4L TMEM150B LINC00471 ACTN4 FYB1 ARHGEF1 DESI2 ANKRD44 ST3GAL5 CCNJL TCERG1 AHDC1 DTYMK TTC39C SMG6 IL2RB CD55 USP34 SPECC1L NEMP1 RORA-AS1 SLC29A2 AD000671.3 DNAJB5 SLC25A26 SSSCA1 AC104695.2 ECHDC2 NBN AL390957.1 TALDO1 UTP3 DCPS PAXBP1 UBE2D3 PTP4A1 NTPCR MSN BANP AC016405.2 CHST11 EIF4B ZFR2 AC104452.1 AC087164.1 AKNA KLHL21 ARL4C DNAJB14 CCDC114 PLA2G16 ZNF584 GSAP RASA3 PARP16 KAT6B KLF3 ACYP2 C7ORF25 AL359736.1 CASP9 LTBP3 PLK2 RAB7A KPNA3 LRRFIP1 PARD6B PYM1 TRAPPC10 PRKCB HMGB1 CCDC12 ADARB1 ATF4 ZC3H18 AC069431.1 PRR5L AC068234.1 ARSG PRKACA CCND3 SPICE1 BICRAL CASKIN2 RGP1 LIPA NME6 WNT10A HIP1 CEP104\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 MBOAT7 KIF2A ANKRD44 MIDN E2F3 STX10 RAPGEF1 C3ORF18 MYO1F KCNIP2 COQ10B C17ORF107 ZCWPW1 RHOB EMC9 HOMEZ LRRFIP1 ITPR1 CIC HEXIM1 GRK6 BAIAP3 CNOT3 CDC42SE2 CDCA3 SDR42E2 SIN3A RAD9A KDM4C PLAG1 PTRH1 ATXN1 NUB1 SLC1A5 AL133523.1 ZNFX1 RAB8A PYCR3 NTNG2 HNRNPA0 PLIN3 AC008764.4 ITGB4 ABHD12 TBC1D10B MBTD1 GATAD2A GART C1ORF174 ZFP36 RBM15-AS1 USHBP1 WDR1 SERTAD2 PTMA L34079.1 GSK3B RRAS MORC3 AL020995.1 IL2RA MYH9 UBE2D3 NUCKS1 SENP3 RCOR1 PTPN12 DDX3X LINC01003 THUMPD3-AS1 MSMO1 C21ORF58 AP001033.1 FYN ANKRD16 MBNL1 CBX7 FAM107B GRID2IP ABHD15-AS1 CARD19 XYLT1 MCF2L2 IQGAP1 AC107214.1 SLC4A7 ACLY EIF1 DLEU2 ADAMTSL4 LINC01126 COTL1 FKBP2 PHF12 CFL1 RHOA TK1 CCDC9 NOLC1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL390957.1 NAIF1 PNKP GTPBP6 TECR SIN3A SPTLC2 VIM-AS1 LMTK3 CIC IQCN NLK IDI1 INPP5A FOS SLC45A4 MOB3A FBXL12 RELT ERN1 ERCC1 STX10 NFKBIA MRPL24 MTO1 EIF1 NOSIP AC024592.3 MMAB IFRD1 AC008764.1 PLK3 LYPD3 FARSA ZNF438 EPOR AC025283.3 AC008105.3 MTMR3 GADD45B SLC1A5 PLA2G6 EZR GAS5-AS1 AP001458.2 MFSD12 GAK MIDN CARD19 WDR1 TESK1 ZSWIM6 LINC01137 NUP98 MGA MAP3K11 DUSP10 CCDC9 IL1B RPS6KA2 PARD6A NSUN6 TAF4 SQSTM1 LINC01135 BCR GTF2A1 KAT6B NUDT8 FIZ1 HSPB11 ATG5 SPATA2L CCDC59 E2F3 CHD4 PTMA VSIG10L ANKRD11 FLNA YIF1B MTMR4 ETF1 H3F3B NR1D1 PRKACA CD55 HIVEP2 PPP3CA PRKAG2 EIF2AK3 SELENOK CCDC88C AC008440.1 CASP9 QRICH1 DERL2 CAMTA1 HOMEZ SHARPIN\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERCC1 ZFP36 MIDN IL4I1 EHD1 TSKS CIC MNT PNKP MBOAT7 MXD1 HLA-DMA AL138720.1 HOOK2 ASF1B SRSF5 IQCN AC027644.4 BBC3 RNF44 HEXIM1 STK40 SIN3A DNAH2 ATG7 VPS37C SP1 H3F3B SUCO UBE2S TLCD2 RSPH1 CTNNAL1 HMGA1 HSP90AA1 PIP4P1 FAM214B C17ORF107 ALDH6A1 CCNL2 STX4 IPMK ZBTB3 IDI1 ADAM10 RARA STX5 H2AFX EMC9 PITPNM1 ACTR1A CAMTA1 NFKBID IFNGR2 USP22 AC011481.2 RAB11B-AS1 APBB3 TXNDC16 STAT1 ATP1A1 CDC37 HIST1H2BC ZNF18 PPM1F SKI AC008764.1 SCAF11 STK11 TEX45 MAP2K3 SERF2 RAB3D AP4B1 AP000787.1 TDRKH ARNTL JARID2 MTF1 CCDC9 PARP2 RPN1 ZNRF2 NANS KLF10 CAPRIN1 CIPC AC104695.2 VPS35 CRK CIRBP SF3B6 POLM C9ORF72 GNB2 RBM14 CARS2 TTC33 AC004923.4 INTS6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MGAT5 NFE2L3 WWOX Z84492.1 PLEK GNG7 FAM78A AC068896.1 ZNF107 ACOX3 MSL2 IL5RA LRRC31 TNFRSF14-AS1 NUDCD1 STIM1 MAST4 ZFPM1 ASH1L CNR2 PTPRC TRAK1 AL136962.1 SCML4 AC007728.2 TNFAIP8 GTF2E2 SLC37A3 AC135371.1 FOXP1 DNM2 LINC01888 AL590560.1 PIWIL4 HNRNPL NOD1 YIF1A TRMT6 GGA2 SIDT1 AC005332.8 AP000777.2 CACTIN EXOSC4 PALM2-AKAP2 ZGRF1 AC008691.1 CLASP1 C3ORF58 TEC SYK BRPF1 AL512625.2 GRHL2 FAS CCDC65 NAA16 CA3-AS1 PANK3 NUDT21 COL15A1 MYO16 ATG3 PIKFYVE SEPT7-AS1 PMEPA1 CDK14 COL16A1 ACTN4 GLIPR1 PITRM1 CAPN12 CAMK2B MRPS5 AL138752.2 MTO1 CEP170 MIA2 ITPKB PNP AC096920.1 AL157756.1 LINC02363 RPS6KB2 FAM13A NUMBL EIF3E UVRAG EPB41L1 VPS8 PEX6 TTC39B HIST1H2AH AC016831.7 PODXL2 CDCP1 CARD19 MRPL34 KCNAB2 FSTL3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IKZF1 FAM107B RIN3 PATL2 AC016831.7 CORO1C USP1 TMEM131L TXNL1 AL139383.1 STX11 TIGIT DLEU2 CCND3 TBC1D5 CYFIP2 CELF2 UBAC2 MOGS EPC1 ADAT2 SLC25A28 ILDR2 METTL21A PARD3B AC011498.1 SEC22C PES1 AC005041.1 NDUFA5 STIP1 GSTM5 ASS1 TXNL4B TRAV22 PCNT STAT1 AC048341.1 SLC11A2 LFNG AC051619.4 JOSD1 RASA2 SLC13A3 PMPCB MAP3K14 WDR74 NFKBIA ORC2 C1ORF141 GREM2 PLAC9 UBE2D3 RBM14 TGFBR1 ATP6AP1L ITGA7 MFSD13A C12ORF4 MIR155HG LINC02328 TSPOAP1 GNG7 LINC01169 ISG20 PAG1 ZSWIM4 AC090617.5 LY9 PCNA HERPUD1 ENTPD3-AS1 MXD4 CDKN2B-AS1 ALOX5 TLCD2 OGDH RPS9 BCL2L14 SRRM3 PUS7L DOCK9 AC023796.1 ARHGAP12 RAPGEF6 FZR1 ZNF827 ZNF627 PRDM2 CTSZ SF3B4 LSM5 IL15RA AP003472.1 HJV TOMM40L MYL6B RHOH NUP133 HACL1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MBP CIITA IKZF1 FOXP1 LPP ST3GAL1 CELF2 IL21R MB21D2 FOXN3 UBAC2 TCF4 IL4I1 ARMH4 SMG6 XYLT1 RIPOR2 ADAM19 CHST11 SH2B3 MSI2 BCL2 RREB1 LDLRAD4 WNT10A CPEB2-DT CBLB GALNT2 IQSEC1 TBC1D5 FLNA KDM2B HIVEP3 ADTRP SUMF1 ADAMTSL4 HIVEP2 IL7R ELF2 SERTAD2 BHLHE40-AS1 BACH2 ALOX12-AS1 TSPOAP1 THEMIS2 P2RY8 SNX9 PPP3CA SETBP1 MED12L ETV6 MAML3 RBPJ MEF2C ARAP1 TAF10 AHR RUNX1 TG RPL23A LIMD1 HLA-DMA FAM117A WDR1 CNOT3 CFLAR KLHDC4 RAB11FIP1 CCDC88C ACAP2 MALAT1 SUSD6 PACSIN2 ST8SIA4 HECW2 AC068896.1 RUNX2 GMDS EZR ARHGAP24 SMIM20 RGS12 XXYLT1 SLC2A1 OXNAD1 PRKCB MIR181A1HG ARL4C GNG7 PI4KB H2AFX CASP9 SGMS1 STIM2 AC109492.1 PIK3AP1 BCL11A RIC1 NUP210 CERS6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: BCL9L LRRFIP1 PLEK GRK2 TMED7-TICAM2 MOB3A ADD3 ANP32A SLC11A1 TRABD2A AL355512.1 H3F3B CHI3L2 PTMA SMIM33 GNG7 ALOX12-AS1 TBKBP1 MEF2C ARHGAP25 GAK CD180 LHFPL2 MED14 MED29 THEMIS2 CXCR4 VMP1 STK40 ACTN4 AIP MXI1 NCOR2 CTDSP1 TTC39C DENND2D DGCR2 NKRF SMAP2 GRPEL1 JADE2 CYB5R1 AC097534.1 CLIP4 IPO7 SMC3 PISD C11ORF21 ARMH3 PLAU GGA3 ZNF518B PYM1 TRIM36 TBC1D8 ELL XYLT1 LSP1 CXORF65 ZMIZ1 MALINC1 LMNB1-DT SKAP2 CD55 CTPS1 IQCD F5 CATIP C1ORF109 SSBP4 FAXDC2 HINFP SOCS7 XPO1 LIMK2 HIRA TRERF1 KLF16 NAA50 MYO1F HK2 IQCN ZNF718 AC006449.6 SOS1 LINC01888 ZCCHC14 AC008629.1 DGUOK TMIGD3 RNF44 DARS-AS1 TNFSF12 CTDNEP1 AL391597.1 GFPT1 SH3D21 TMEM121B PPM1F AC048382.5\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: IRS2 CMTM7 CCNI CUL1 AC008629.1 OSTF1 ABRAXAS2 DCTN5 ARID2 RIF1 CDK6 ETV6 TNRC6B THRAP3 FLOT1 PADI4 ARCN1 PKD1 MRPL4 ASCC1 C5ORF51 AC008957.1 DMXL2 AC061992.1 CHRM3 PHLPP1 RAB3GAP1 AC106782.2 AKAP9 NCALD STAMBP JPT1 ULK1 CCNA2 LMBR1 OPN3 RAD51B GRHL1 RNF216 SPG7 HMGN5 EIF2D DVL2 USP4 RTF1 VSIG10 AL034549.1 MYO1B MGAT5 MARS RALB PHACTR2 LINC02522 TMOD1 SMPD3 ANKRD11 PLA2G4C\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ERCC1 NEAT1 DNAH2 ETV6 CD82 NFKBIA ARHGEF3 AL138720.1 MNT AL390957.1 TBC1D5 CARS2 HOOK2 PTPRC MBP FOXP1 ATXN1 ETS1 AC069368.1 AC008105.3 NDRG1 ASH1L FLNA RASGEF1B EHD1 TNFAIP2 TNFAIP8 CACNA1C PANX1 PXN PRKAG2 PKM CMIP ZCWPW1 MEF2D ITPR1 AC079313.2 FIBP RARA LINC02356 DLGAP1 RBPJ CHST11 CATSPERG CKAP4 ZMIZ1 RAP2A AC027682.4 HIVEP3 IL1B PLEC PDLIM7 SLC43A2 STK40 PPP1CA PLCL2 CHD4 RCC1 SLC1A2 MICAL2 AL355315.1 SEC16A CARD19 AL158152.2 NR4A1 CUX1 SH3TC1 BIN1 PTPRE R3HDM2 STK10 C3ORF58 ARHGAP26 AC008014.1 ATP1A1 SH2D3C PATL2 ADAM10 GRK2 NUFIP2 GASAL1 SPTBN4 GATAD2A STIP1 BICD2 GPR157 CCDC114 SIK3 CFLAR KLF9 NPTN SCARB2 KLHL21 SIN3A RHEB AC016831.7 PIK3CD ACTB EGR1 AMN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: STK10 H3F3B UBN2 CAMTA1 LTA PBX2 SMARCA5 GADD45B PDE1B PGRMC2 DSE FCHSD2 KIF22 SNRK MAP4K4 ATP2A2 HIVEP2 P2RX7 DNM2 PTPRJ TWF2 CELF2 STK32C RSU1 HIST2H2AC IGF2R SH3GL1 CIC MYL5 BRICD5 TMEM167A C6ORF62 AD000671.3 C15ORF48 MAP3K14 CTSZ PPP2R2D AC243964.2 PLAUR AP000787.1 PLIN3 GSE1 NDUFV2 EIF1 NDUFAF6 ENSA METTL8 TMEM145 AC007192.1 PITPNM1 SF1 AL928654.3 DCTN4 SDE2 LAMTOR4 CTDNEP1 EHD1 LDLR WRB PGM3 TNRC6B ARL15 DNAH2 SLC25A37 DLGAP4 ACOX3 TNFRSF8 ARID3A TPTEP2-CSNK1E AGPAT1 TSPAN18 ARHGAP45 TLCD2 FARSA CAPG PLA2G12A FYB1 TEX264 CHMP2B UFC1 MYH9 KLF6 RFXAP EIF2AK3 MCPH1-AS1 PLOD3 ZC3H3 ZMYM5 AL359710.1 MBP MIDN CDC42EP3 HIST1H2BJ Z83844.3 RERE WDR13 BIRC6 XRCC5 ARHGEF3 ERICH1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ATOX1 RUNX1 HOOK2 CIC HIVEP3 SEPT9 SIN3A MNT CHD9 ZSWIM6 HOMEZ LBH LINC01126 MSI2 CASP9 GRAMD1A IBA57 PNKP UHRF1 ATXN1 AC069368.1 AXIN1 OSBPL3 TLCD2 DNAH2 LINC02356 RNF167 CD82 METTL13 AC138150.1 KCNC3 CHD4 GM2A RRP9 HIPK2 ITPKB SP1 EIF4G1 CBLB EEF1G NOSIP ARNTL C1ORF52 KDM2A C21ORF58 ARSG HLA-DMA S100A11 ATP8B3 P4HTM CRYBG1 GTF2I RPS6KA3 H3F3B ARID1A AC090517.4 NEAT1 DERL2 SBDS HIST1H1E AC016831.7 SOD2 DOCK10 EIPR1 NQO2 SERTAD2 PDE4B SESTD1 PITPNA CCNY SLC5A10 AC020916.1 ARAP1 RMI2 CCND3 KIAA0895L SMG9 HDLBP RELT NCAPG2 THEGL PREX1 RNF44 CHMP2A PRPSAP1 GMDS AL627171.1 INTS6 HNRNPUL2-BSCL2 PI4KA GPR137 LINC01136 NBN KAT8 LUC7L SDR42E2 GATAD2A RRAS MBD6 STAT6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAPRE2 CROCC AC109492.1 TSPOAP1 CHD1 EVL LFNG MAP3K14 LPCAT1 CDC27 ARHGAP26 LBH LRP3 MYO18A SRSF7 CYTH1 ZBTB32 TAF15 PPP2R5B RNF181 NADK NEAT1 ALDH18A1 SUN2 MCTP2 ABLIM2 KANSL1 HOOK2 AK9 ZNF365 KLF13 AC010487.3 CDC37 ITGAE AC243829.4 MBNL1 AC016831.7 ERI1 IQSEC1 DRAIC PPM1F SIN3A PDE8A STAT1 KCNAB2 FAM13A APOL3 ADGRG5 INPP5F GRPEL2-AS1 PRPSAP1 PLCB3 DAD1 FBF1 VPS37B CASP3 ZDHHC20 ZBTB25 NAA50 CENPT SRCIN1 DMTF1 CCDC114 RHOF IL12RB1 SRSF4 AC013270.1 AGBL3 UTP11 C19ORF84 C17ORF107 PSMB9 AC005837.1 RASSF5 NOLC1 MDC1 ENSA AL356417.3 HNRNPF CPAMD8 RAD9A PLEKHH3 PPP6R1 NFKBID USP45 ABHD17A ETFB ATXN7L3 OSBPL8 CHCHD4 ETFBKMT TNFAIP8 LIMD1 DYRK2 AK3 AMN1 ERCC4 PRKAR2A MTSS1 CTDNEP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TTC33 B4GALNT3 CEMIP2 ST8SIA4 IKZF1 CENPT HDAC7 PTPRC IRF3 GSE1 LINC01588 PIM1 LINC00598 CHSY1 CNNM3 PDE4B FOXK1 NUBP1 LINC01185 MINDY1 EHF AC021188.1 STXBP5-AS1 STX12 AC019131.1 TPD52 ADK SNX5 ANXA11 TUBE1 TBC1D2B PURB MAP1LC3B2 APMAP SEMA4A HNRNPUL1 RDH14 UMAD1 USP33 ZNF585B ALG5 TRIM29 ANKRD17 LIPA SLC25A26 DARS RRP12 BHLHE40-AS1 MAPK1 ZFAND6 NAMPT CHCHD3 LINC02102 TUBA1C NUDT19 OCA2 PTPRJ SGCE SIN3A GPR137 MAPRE2 AURKA AL357060.1 MBD4 WDR19 MKKS H2AFV LMBR1 P2RY8 NLRC3 GIT2 GALM PRPF4B RAB8B PIF1 SEPT9 KIAA0100 FOXD1 ASAP1 B4GALT7 FGF14 LRRC8C ZBTB20 CELF5 KIAA1671 MED15 OSBPL3 SEPT6 FHIT CASKIN2 PHYKPL FRMD4B GRB2 SLC2A5 LINC01990 MCCC1 WDR86 AC011773.4 ELF1 KLC4\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: SIN3A HOOK2 TBC1D10B HNRNPL ZCWPW1 MNT IBA57 TECR ZNF846 PRICKLE3 MIDN CARS2 PLEC AC016831.7 SETD3 HNRNPUL1 ECE1 MBOAT7 PHF19 ACTB ANKRD11 AC008440.1 AC018816.1 EFCAB14 GASAL1 ZDHHC5 KCNC3 ELL AL139246.5 MIA-RAB4B HNRNPUL2-BSCL2 ATF4 LMTK3 AC010271.1 KLF13 SDR42E2 BTBD19 EVI5L PCF11 ADAMTSL4 PLA2G6 RPL36 GM2A IRAK2 DYRK1A FLNA CIC CREB3L2 HEXIM1 HOMEZ NFKB1 DNAH2 ANKMY1 ZNF367 STUB1 PIK3CD HAVCR2 PNPLA8 SF3B6 ADRM1 MFSD12 C21ORF58 RARA DBP KDM8 TSC22D1 AXIN1 HLA-DMA SMIM25 SCLT1 PIK3R5 UBE2D2 C15ORF48 AC079313.2 CD82 AC010271.2 TOP1 AAMP DDAH2 BMF IPO5 PMEL HSPB2-C11ORF52 PLAUR MTFR2 CTDSP1 SKI RARG FAR1 LENG1 PBX3 CBX5 DGKQ SEH1L AC068580.4 PFKFB3 PDIA6 ATOX1 HIVEP3 EME2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 PRKCH MBP SPTBN1 CELF2 MAML3 DLGAP1 JAK1 RUNX1 ARHGAP26 CHST11 CDK6 RASGEF1B KLF13 EEPD1 GRK5 IQGAP2 MALAT1 SMAD3 ST3GAL1 ELMO1 TBC1D5 FOXN3 AL390957.1 NR4A2 JMJD1C LRCH1 CYTIP AL450326.1 HECW2 NDUFV2 GSE1 UST CDH23 GATA2 SYNJ2 TRPS1 IKZF1 ETV6 PLEC TNK2 ARHGEF3 AP000787.1 ANKRD33B ZEB2 TG MCF2L2 DNAH2 FAM117A PNKD STK24 ELMSAN1 SETBP1 TMEM192 NEK7 SLC6A6 XXYLT1 ZMIZ1 PRR5L CAPZB TNFAIP8 MYEOV TNS3 HIVEP3 AKAP13 CFLAR MOB1B LIMS1 ZBTB20 ITPR1 RERE PPCDC AC007384.1 PRPSAP2 BCR HDC ANKRD11 DRAIC CORO1C GSK3B WDR1 CD82 ST3GAL2 ZNF804A TSPOAP1 EVL ATAD1 MAP3K5 CYTH4 ASMTL PNKP AMPD3 SREBF1 AC011747.2 AL160408.2 ANKRD44 DGLUCY UMAD1 SH3PXD2A ZBED5-AS1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: PDE4B SEMA4D IKZF3 WASL TBC1D4 HDAC4 AC004241.1 SLC4A4 MEGF6 TIMM9 PIK3IP1 PIP4K2A AL357060.1 MARK3 KMT2E MB GYS1 GOLGA5 FAM49B GPATCH2 AP000350.4 CCDC194 BUB1 UBAC2 MIA-RAB4B DAB1 DGCR2 LINC00299 PACS1 CEP85 SLC44A5 PCBP3 AMOTL2 LINC01423 KAT6A ENTPD3-AS1 LY9 HSP90AB1 GLIDR CNDP2 STIP1 AL590440.1 GNG2 DAAM1 FARSA SIN3A TCF3 GNG8 LINC00467 RPTOR AP001025.1 PNPLA7 ANKRD17 KDM2A RPS6KA5 ZC3H4 AL158152.2 AC024909.2 MOB3A PRKD1 IL1R1 RPL39L TRIM31-AS1 UBALD1 AL355076.2 PARP16 IVNS1ABP TSPOAP1 CLN5 AC120024.1 BRWD1 BCAR3 PAQR8 AC023906.5 RIPOR2 IFRD1 ZNF675 NSG1 ATXN1L IL7R PNPLA8 PLEKHA4 UBE2J1 CEP68 NADK2 HOXB-AS3 FUBP1 AC003958.2 PNKD ADAMTS6 TAF1B MECP2 SPRED1 DNAJC21 STK40 TLN1 ARHGEF6 CIC TOMM40 VAV3\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: CELF2 ZBTB16 FOXP1 ATXN1 GSE1 TBC1D5 ARHGAP26 AP000787.1 SMARCA2 KBTBD3 FOXN3 DUSP10 MEGF9 FOXO3 MXI1 NOL4L NFIX DLEU2 CBLB AC008695.1 ATP2B4 TNS3 IKZF1 RUNX1 BCL9L ATP8B4 CAMTA1 GRK2 FNDC3B ANKRD33B LIPA LRRFIP1 HDAC6 LINC02029 AHNAK HIVEP2 GSK3B CFLAR PPM1B CLEC16A BCL11A KAT6A IPCEF1 PYCR3 PACSIN2 MAT2A NEMP1 CHST11 ZBTB2 KLF10 CORO1C PKIA-AS1 ANKMY1 LINC02453 FNBP1 XXYLT1 MAP3K3 CDK6 RUNX2 INPP4B SETBP1 RIN3 CDC42SE2 AKAP13 UMODL1 ST6GAL1 AC010894.3 ELMO1 UTRN RAD51B CREB3L2 CCND3 SLC40A1 KLF13 AC016831.7 PAX5 DEDD2 UMAD1 ZNF367 E2F3 ELL USHBP1 AC116366.3 WDR77 CCDC6 OGG1 RNF44 MNT HIST1H2BC TGFBR1 ATG5 HNRNPUL2-BSCL2 DUSP22 CEP170 BCL2L1 CFL1 FBXL12 KDM2B KLHL21 FOXN2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: TPT1 NCOR2 ZSWIM6 ZMIZ1 SH3BP5 CDK6 ARHGAP26 FLI1 PLEKHO1 CELF2 TLE4 TSPOAP1 ITPKB TG JARID2 FAM86C1 SSSCA1 FOXO3 USP47 FMC1 PRKAG2 CROCC CCDC167 IRF2 PREX1 CDC42SE2 AC087276.2 BMF CDKN1B ARMC2 MRVI1 MCM9 ETV6 MXD1 TNFRSF1B TSKS ST3GAL5 HOOK2 SNX9 SFMBT2 ZNF341 AC090607.3 PPM1B DNAH2 TRIP12 RUNX1 IL1B TAPT1 TMEM248 STK3 TRIM8 APBB3 TXNIP FNBP1 FNDC3B ZNF710 ZFAND3 GPR137B SLC3A2 MYO18A CYTIP RELL1 HDLBP RPTOR DESI1 NFKBIZ ZFP36 MARK4 AC083798.2 ZFHX3 AL356215.1 AC011747.2 RPL23A FAM117B SLC19A2 TRIM25 HIPK3 PLCG2 HMBOX1 CEP295 MIR3681HG BCAS3 FOXP1 KDM4C AC125611.4 MLLT6 CHST11 PRKCQ RECQL5 DYRK1A AC007285.1 MORF4L2 PPP1R10 HLA-DMA ABHD6 MGAT2 ZSCAN31 URM1 MOB3A MKLN1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: DNAH2 KLHL25 MPHOSPH9 DDAH2 TAF10 VMP1 TMTC4 MIB2 ARID1B MVD KRI1 KIFC1 JADE2 GDPGP1 COQ8A FBRS NEAT1 IFT140 CARS2 AC073343.2 DNAJB5 ZNF787 ZC3H15 AUTS2 NCF4-AS1 UBA3 SACS HNRNPL AL161785.3 CXCR5 MAP3K3 CDK14 SGSH SNTB1 MICAL2 USP6NL AC011481.2 LUCAT1 ZCCHC14 TBCCD1 SAMSN1 SLC2A8 LINC00877 RERE CYTH1 HDAC4 CENPK TLK1 MAP3K8 ELMSAN1 GAPDH TCF7L2 PLLP TRMT1 DNM2 MAT2B GPD1 CTDSP2 INPP5A ZNF341-AS1 ZNF131 SPAG9 CCDC65 NEMP1 RP2 NHSL2 SLC10A1 TLDC1 P4HTM DOCK9 FFAR2 MXD4 HLA-DMA AC026202.2 CAMTA1 TSKS TTBK2 RREB1 DYRK1A COPE PHACTR2 AMDHD2 HIP1 NCOR2 SFPQ SLC23A1 PRADC1 TRMO XPOT CCNF ABHD17C AP003721.2 AL138720.1 FAM78A RUNX1 CPSF7 HAUS6 PSMD4 SH2B1 RRBP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 MED12L FOXN3 RUNX3 RAPGEF1 MBP CHST11 TSPOAP1 IL7R AKAP13 UBAC2 CYTIP AC068896.1 ST3GAL1 NEAT1 ANKRD44 ELMO1 ITPR1 TBC1D5 RIPOR2 STK17B TNRC6B INPP4A IKZF1 ATG5 PDE4B DOCK10 CCDC88C RPS6KA2 HIVEP2 PACSIN2 MBNL1 LINC01588 MXI1 SEPT9 BACH2 AUTS2 IRF2 ATXN1 LINC01004 PATL2 TGFBR2 AC069368.1 CAPN2 ADAM19 GATAD2A RUNX1 LEF1 RPTOR FAM214B TG LINC00598 SOD2 AC016831.7 SERTAD2 MSI2 KLF12 CDH23 RBPJ ZYX PTPN2 CD82 XYLT1 AC096920.1 ZMIZ1 PLXNC1 RB1 ASAP1 ARHGAP26 MGAT5 AC008764.1 CARS2 AL390957.1 SEMA4D VMP1 AL138752.2 MAML3 ANKRD11 CIITA LRRFIP1 MAP4K4 RASSF3 ARHGAP15 UBR5 ARL4C RERE GSE1 TRAJ28 MYH9 TNFAIP8 MAML2 PTK2B PIP4K2A MAD1L1 PPCDC CSGALNACT1 PPP2R5C RFTN1 PIK3R1 WWOX\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FOXP1 RUNX1 AC010894.3 BACH2 HIVEP2 ANKRD44 RAD51B AC068896.1 CELF2 GFOD1 CHST11 CIC TBC1D5 MAML2 ZMIZ1 LINC01588 PVT1 FOXO1 ARHGAP15 ARHGAP25 ARHGAP26 PRKCH PNKP ACTB PREX1 VOPP1 AC016831.7 HNRNPUL1 WDFY2 NEAT1 ITPKB PCAT1 IQSEC1 TNFAIP8 ETV6 SERTAD2 CSK FNBP1 LPP UTRN CD247 NCOA2 SETBP1 PTK2B MYO1E CD83 SLC23A2 LFNG GGA1 FOXN3 VAV3 PDE4B CCDC88C TSPOAP1 SEC22C AC243829.4 RFTN1 GNG7 TMED5 CDC42SE2 HLA-DMA C1ORF174 SEPT9 NEK6 TRERF1 ACOXL IQGAP2 KLF13 DOCK8 NFATC2 MIR3681HG FAM107B GRK2 PLCL2 ZFP36 ITPR1 FAM214A PIP4K2A TNRC6C SEMA4D ZSWIM5 ADGRE5 ETS1 SH3KBP1 L3MBTL3 ADAMTSL4 DUSP22 ZNRF2 LINC00598 CAMK1D SCML4 BRF1 RNF139-AS1 INPP5A ASAP1 AL139383.1 MSRA RASGRP1 ARID5B LINC02341\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: AL138720.1 FOXN3 PRKAG2 TXNRD1 SLC43A2 RUNX1 TGFB1 PPP2R5C RXRA ABR NCOR2 PATL2 PPP1R12B CPQ AC008764.1 AC016831.7 RAD51B FOXP1 AKAP13 ARHGAP26 ITPK1 KIFC1 KIAA0930 ALOX5 PFKFB3 HOOK2 RGCC CUBN DOCK10 MKLN1 VMP1 TSPAN14 MGAT5 LITAF NSMCE2 USP12 MIR29B2CHG DOCK4 UPP1 LINC01588 CYSTM1 MAML3 SIL1 OXSR1 PLEKHO1 ERCC1 CAST RASGEF1B PDCD1LG2 ARID5B CCDC88C SSPN AC068896.1 NUMA1 SLC37A3 RAPGEF1 AC100849.1 AC079313.2 PTPN2 IQGAP2 MKL1 NECTIN4 HDLBP ATAD2 HLA-DMA TENT5A ITPRIP ZBP1 ENTPD1 GSTO1 SDCCAG8 FAM129B TFE3 GSAP KIAA0513 NSD3 G3BP2 GAS7 ETV6 SKAP2 GXYLT2 JAK2 DHRS3 CEP290 STK4 LINC01004 TRUB2 BACH1 FIBP PDK3 SUN2 RNF216 BHLHE40-AS1 EHD1 LINC01629 SEMA4D TRAPPC10 AC087500.1 TRIM21 NDUFA6\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: ZBTB32 AC048341.1 SH2B3 TGFB1 SEMA4D BCL11B MBD3 AP3D1 BRD4 GADD45G ZNF414 GNG7 NKIRAS1 AC006547.2 KBTBD8 MBD1 AC022075.1 AC011462.1 CCDC9 IGFLR1 PLEKHJ1 DRAM1 BICDL1 BRPF1 OSTM1 HSPBAP1 DENND6A MRPL47 NGDN TLE3 RASAL3 BCL2L2-PABPN1 TCAIM PCIF1 AL359736.1 DGCR8 SNAPC2 C19ORF84 AC010336.1 PTGES3 ELAVL1 GAPDHS AC016405.2 TGFBR3L STX7 BORCS5 TTC9 PRADC1 CTTN AC005258.1 PDP1 LRRC49 MAGOHB NECTIN2 AC007513.1 RFT1 AC002996.1 CUL1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: FAM102B IFI27L2 AMZ2 YARS TRIM33 ITK RAB26 RPRD1A MAML2 HDAC4 DCAF4 CASP8AP2 HDGFL3 PIGF TSC22D1 UBL4A PIK3R1 ZFAND2B PLB1 PLOD3 CRNKL1 NRXN1 ASF1B AKT2 EPS15L1 AL451060.1 XPOT CLN5 BLK SLC5A2 STIM1 MED22 GSR NCS1 KANK3 LINC01003 TRIM26 TP53I11 LSM2 RCSD1 TIGIT RNF44 KIFAP3 SNTG2 PTPN4 SAR1A ZNF292 RAB14 TNIP3 FAM210A KLF9 SEL1L3 CTNNB1 SLC4A7 AGK ACAP1 NUDT2 UBQLN1 LAPTM4A ZDHHC5 ZNF692 FAM177A1 FAM173B CCDC12 DDX17 LPCAT4 PRKRA ARG2 ZNF77 AL450998.2 CDC42EP1 RPS6KA5 INPP5A ETNK2 CASK MYBL1 ERCC6 TNKS1BP1 TMPRSS7 PCAT1 NES HSPA4 LAMP1 KIAA0513 HECTD4 RAB11B-AS1 ZNF66 SLC4A2 PODXL2 INO80B TUBB2A ZBTB41 C1ORF174 STARD4 IL10RA DYNLT1 DCAF7 SAP18 RNPEP ARAP1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: HOOK2 SIN3A PFKFB3 DNAH2 HMGA1 FER MIDN RRAS SEC31A TNFAIP2 IRAK2 PPP2R5E BRF1 ZNF846 PER1 AC008403.1 KLHL21 RNF167 MTMR4 AP000311.1 CITED2 RARA RMI2 RFX1 ZNF140 OSBP MBOAT7 ASTL ANKRD10 SQSTM1 HSPA1B CASP9 AL357060.1 TRAPPC6B SLC38A2 KLF6 ERCC1 AP3D1 MKNK2 GTPBP6 TMEM219 AC008764.1 HNRNPDL KIFC1 FAM214B HSPA5 SGK1 KLF10 ASF1B PPP2R5C KLF13 GRK2 PTMA MAX CDC25C CRK LPCAT3 CKS2 APLP2 FIZ1 HMGCS1 FAR1 RTN4 C21ORF2 STX10 HYAL3 DLGAP4 RALGPS1 ASB2 KCNC3 SAP18 RAB26 TP53BP1 AC011498.1 TAOK3 HOMEZ NHEJ1 AC025682.1 RPL23A HTT-AS DBP PNRC1 AC006486.1 ARVCF DNAJB5 SDR42E2 AC090527.2 PLEC TPT1 STK40 RNF215 DCAF1 PTRH1 NANOS3 UGP2 DCAKD RELA FBXL19 NPTN B9D1\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]
[ { "content": "You are an expert who knows a lot about single cell biology and genomics and will help me solve a series of tasks related to single cell data analysis.", "role": "system" }, { "content": "Below is a list of {gene_names} ordered by descending expression level in a single-cell ASAP-seq sample. Your task is to select one cell type to which this cell most likely belongs from the following candidate cell types: {cell_types}. Make your choice in format 'Final Answer: Prediction'.\n{gene_names}: MAML2 AC120114.3 SYS1 SPR AC093512.2 HACL1 RAPH1 CLNS1A ANGPTL6 RAB11A SNTB1 ZDHHC5 GACAT2 AL034405.1 HLCS LINC01588 SLC35A2 PRAG1 FAM169A RNF4 AL049629.2 PFKFB4 AC009126.1 USP44 MAP4K4 RFC3 VAV3 ARHGAP26 SDAD1 AC008591.1 AC079313.2 LINC00598 GNA14 TLR5 PTPN12 PLAC8 AGPAT3 NUAK2 KDM4B AC079385.1 CAPN2 PRKCQ SERTAD2 ZNFX1 KANSL2 ECPAS GALNT12 UBE2Q1 DTHD1 ULBP2 WBP2 GOLPH3L SGPP2 SORL1 ZFR2 CHCHD4 MCM6 CEACAM21 ZNF292 FAM117B SUCO AL451069.3 ATG5 NIFK-AS1 POU2F2 INPP5D CSNK1G1 DRAM1 CST7 STAT5B ZNF575 AL627171.2 HEATR3 FAM111A-DT CAMTA1 HTR4 PPARGC1B HSP90AA1 TBC1D13 KLHL3 CYSTM1 AC003973.1 HNRNPUL2-BSCL2 PPM1K PRKCA AC068888.1 AC141424.1 SLC25A28 DIP2B FLNA SMAP2 CORO1C ACVR1B SLC25A6 CMSS1 ACTL6A TMED7-TICAM2 CFAP161 CLK4 JARID2\n{cell_types}: 'NK', 'unknown', 'Effector CD8+ T', 'Naive CD8+ T', 'Monocytes', 'B', 'Naive CD4+ T', 'Effector CD4+ T', 'DC'.", "role": "user" }, { "content": "DC", "role": "assistant" } ]

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