def _initialize_bio_linux():
	sudo("echo -e \"deb %s unstable bio-linux\" >> /etc/apt/sources.list" % viral_urls["BIO_LINUX_URL"])
	sudo("sudo apt-get update")
	_apt_get_install("bio-linux-keyring")
	_apt_get_install("bwa")
	_apt_get_install("samtools")
	_apt_get_install("bio-linux-cap3")
	_apt_get_install("emboss")


# VIGOR
dataset/ETHPy150Open chapmanb/cloudbiolinux/cloudbio/custom/vcr.py/_initialize_bio_linux/original