def install_viralvigor_test(env):
	try:
		_initialize_area_vigor()
		cmd = ("""%s/VIGOR3.pl \
				-D yfv \
				-i %s/westnile.fasta \
				-O %s/westnile \
				> %s/westnile_test_run.log 2>&1 \
				""") % (vigor_dirs["VIGOR_RUNTIME_DIR"],vigor_dirs["VIGOR_SAMPLE_DATA_DIR"],vigor_dirs["VIGOR_TEST_OUTPUT_DIR"],env.VIGOR_SCRATCH_DIR)
		print("DEBUG: cmd[%s]" % cmd)
		run(cmd)
	finally:
		disconnect_all()
dataset/ETHPy150Open chapmanb/cloudbiolinux/cloudbio/custom/vcr.py/install_viralvigor_test/original