def _initialize_area_viral():
	_initialize_env("viral")
	
	env.VIRAL_SCRIPT = "%s/viral_assembly_pipeline.py" % dependency_URL
	
	viral_dirs["PROJECT_DIR"] = "%(VIRAL_ROOT_DIR)s/project" % env
	viral_dirs["REF_DIR"] = "%(VIRAL_ROOT_DIR)s/references"  % env
	viral_dirs["TOOLS_DIR"] = "%(VIRAL_ROOT_DIR)s/tools"     % env
	viral_dirs["TOOLS_BINARIES_DIR"] = "%s/BINARIES"         % viral_dirs["TOOLS_DIR"]
	viral_dirs["TOOLS_PERL_DIR"] = "%s/PERL"                 % viral_dirs["TOOLS_DIR"]
	
	env.VIRAL_REF_FILES = "corona_virus,hadv,influenza_a_virus,jev,mpv,norv,rota_virus,rsv,veev,vzv,yfv"
	
	viral_urls["BIO_LINUX_URL"] = "http://nebc.nerc.ac.uk/bio-linux/"
	
	viral_tars["BINARIES_TARBALL"] = "BINARIES.tgz"
	viral_tars["PERL_TARBALL"] = "PERL.tgz"
	
	print("user:   %(user)s" % env)
	print("host:   %(host)s" % env)
	print("ROOT DIR:   %(VIRAL_ROOT_DIR)s" % env)
	print("VIRAL ASSEMBLY SCRIPT:   %(VIRAL_SCRIPT)s" % env)
	for name in sorted(viral_dirs.keys()):
		if not _path_is_dir(viral_dirs[name]):
			sudo("mkdir -p %s" % viral_dirs[name])
		print("%s:   %s" % (name,viral_dirs[name]))
	print("VIRAL ASSEMBLY REFS FILES: %(VIRAL_REF_FILES)s" % env)
	for name in sorted(viral_urls.keys()):
		print("%s:   %s" % (name,viral_urls[name]))
	for name in sorted(viral_tars.keys()):
		print("%s:   %s" % (name,viral_tars[name]))
dataset/ETHPy150Open chapmanb/cloudbiolinux/cloudbio/custom/vcr.py/_initialize_area_viral/original