license:mit size_categories:n<1K format:imagefolder modality:image library:datasets library:mlcroissant region:us
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license: mit
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# Dataset Card for Dataset Name

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RNA-seq coverage values with corresponding DNA sequences (Source: [NCBI SRR21628668](https://www.ncbi.nlm.nih.gov/sra/SRX17629295[accn]))

## Dataset Details

### Dataset Description

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Each sample/row consists of DNA sequences (input) and track values (output) which are RNA-seq coverage values from the mentioned NCBI experiment. All DNA sequences are part of the yeast genome. There's two sequences per sample: 
1. the loss_sequence which directly corresponds to the track values
2. the sample_sequence which is the loss sequence padded by 1000 base pairs (bp) surrounding the loss sequence in the yeast genome

The track values are as long as the loss sequence and correspond to it. I.e. zip(loss_sequence, track_values) yields the correct input-output pairs.This difference between loss sequence and sample sequence is relevant as coverage values at a position are influenced by positions upstream of it.

Yeast Strain Background: BY4741 
Additional Modifications to strain (currently not reflected in DNA sequence): UBR1 -469A>T 1 (means a single nucleotide change upstream of the gene start).

![image/png](https://cdn-uploads.huggingface.co/production/uploads/63906ad2971c3940b3827b97/OlpPAtNnGDgM0r_Mzq30t.png)
Shown in blue, two tracks of RNA-seq coverage values for the DNA sequence which are the two colorful lanes at top. Each nucleotide is colored differently (see image below). Tracks and DNA sequence are aligned which means that each coverage value in blue directly corresponds directly to the nucleotide vertically in line.

![image/png](https://cdn-uploads.huggingface.co/production/uploads/63906ad2971c3940b3827b97/E9weZDfcNX20rFOJILz2H.png)

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