task_categories:text-generation task_categories:fill-mask task_ids:language-modeling task_ids:masked-language-modeling source_datasets:multimolecule/5srrnadb source_datasets:multimolecule/crw source_datasets:multimolecule/dictybase source_datasets:multimolecule/ena source_datasets:multimolecule/ensembl source_datasets:multimolecule/ensembl_fungi source_datasets:multimolecule/ensembl_gencode source_datasets:multimolecule/ensembl_metazoa source_datasets:multimolecule/ensembl_plants source_datasets:multimolecule/ensembl_protists source_datasets:multimolecule/evlncrnas source_datasets:multimolecule/expression_atlas source_datasets:multimolecule/flybase source_datasets:multimolecule/genecards source_datasets:multimolecule/greengenes source_datasets:multimolecule/gtrnadb source_datasets:multimolecule/hgnc source_datasets:multimolecule/intact source_datasets:multimolecule/lncbase source_datasets:multimolecule/lncbook source_datasets:multimolecule/lncipedia source_datasets:multimolecule/lncrnadb source_datasets:multimolecule/malacards source_datasets:multimolecule/mgi source_datasets:multimolecule/mgnify source_datasets:multimolecule/mirbase source_datasets:multimolecule/mirgenedb source_datasets:multimolecule/modomics source_datasets:multimolecule/noncode source_datasets:multimolecule/pdbe source_datasets:multimolecule/pirbase source_datasets:multimolecule/plncdb source_datasets:multimolecule/pombase source_datasets:multimolecule/psicquic source_datasets:multimolecule/rdp source_datasets:multimolecule/refseq source_datasets:multimolecule/rfam source_datasets:multimolecule/rgd source_datasets:multimolecule/ribocentre source_datasets:multimolecule/ribovision source_datasets:multimolecule/sgd source_datasets:multimolecule/silva source_datasets:multimolecule/snodb source_datasets:multimolecule/snopy source_datasets:multimolecule/snorna_database source_datasets:multimolecule/srpdb source_datasets:multimolecule/tair source_datasets:multimolecule/tarbase source_datasets:multimolecule/tmrna_website source_datasets:multimolecule/wormbase source_datasets:multimolecule/zfin source_datasets:multimolecule/zwd language:rna license:agpl-3.0 size_categories:10M<n<100M format:parquet modality:text library:datasets library:pandas library:mlcroissant library:polars region:us Biology RNA
---
language: rna
tags:
  - Biology
  - RNA
license:
  - agpl-3.0
size_categories:
  - 10M<n<100M
source_datasets:
  - multimolecule/5srrnadb
  - multimolecule/crw
  - multimolecule/dictybase
  - multimolecule/ena
  - multimolecule/ensembl
  - multimolecule/ensembl_fungi
  - multimolecule/ensembl_gencode
  - multimolecule/ensembl_metazoa
  - multimolecule/ensembl_plants
  - multimolecule/ensembl_protists
  - multimolecule/evlncrnas
  - multimolecule/expression_atlas
  - multimolecule/flybase
  - multimolecule/genecards
  - multimolecule/greengenes
  - multimolecule/gtrnadb
  - multimolecule/hgnc
  - multimolecule/intact
  - multimolecule/lncbase
  - multimolecule/lncbook
  - multimolecule/lncipedia
  - multimolecule/lncrnadb
  - multimolecule/malacards
  - multimolecule/mgi
  - multimolecule/mgnify
  - multimolecule/mirbase
  - multimolecule/mirgenedb
  - multimolecule/modomics
  - multimolecule/noncode
  - multimolecule/pdbe
  - multimolecule/pirbase
  - multimolecule/plncdb
  - multimolecule/pombase
  - multimolecule/psicquic
  - multimolecule/rdp
  - multimolecule/refseq
  - multimolecule/rfam
  - multimolecule/rgd
  - multimolecule/ribocentre
  - multimolecule/ribovision
  - multimolecule/sgd
  - multimolecule/silva
  - multimolecule/snodb
  - multimolecule/snopy
  - multimolecule/snorna_database
  - multimolecule/srpdb
  - multimolecule/tair
  - multimolecule/tarbase
  - multimolecule/tmrna_website
  - multimolecule/wormbase
  - multimolecule/zfin
  - multimolecule/zwd
task_categories:
  - text-generation
  - fill-mask
task_ids:
  - language-modeling
  - masked-language-modeling
pretty_name: RNAcentral
library_name: multimolecule
---

# RNAcentral

![RNAcentral](https://rnacentral.org/static/img/expert-databases.png)

RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of [Expert Databases](https://rnacentral.org/expert-databases) representing a broad range of organisms and RNA types.

The development of RNAcentral is coordinated by [European Bioinformatics Institute](http://www.ebi.ac.uk/) and is supported by [Wellcome](https://wellcome.ac.uk/). Initial funding was provided by [BBSRC](https://bbsrc.ukri.org/).

## Disclaimer

This is an UNOFFICIAL release of the [RNAcentral](https://rnacentral.org) by The RNAcentral Consortium.

**The team releasing RNAcentral did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.**

## Dataset Description

- **Homepage**: https://rnacentral.org
- **Documentation**: https://multimolecule.danling.org/datasets/rnacentral
- **datasets**: https://huggingface.co/datasets/multimolecule/rnacentral
- **Point of Contact**: [Blake Sweeney](https://www.ebi.ac.uk/people/person/blake-sweeney/)

## Derived Datasets

- [rnacentral](https://huggingface.co/datasets/multimolecule/rnacentral): RNAcentral dataset.
- [rnacentral-secondary_structure](https://huggingface.co/datasets/multimolecule/rnacentral-secondary_structure): RNAcentral subset with secondary structure annotations.
- [rnacentral-modifications](https://huggingface.co/datasets/multimolecule/rnacentral-modifications): RNAcentral subset with modifications annotations.

## License

This dataset is licensed under the [AGPL-3.0 License](https://www.gnu.org/licenses/agpl-3.0.html).

```spdx
SPDX-License-Identifier: AGPL-3.0-or-later
```

> [!TIP]
> The original RNAcentral dataset is licensed under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication.
>
> This dataset is a derivative of the original RNAcentral dataset and uses a different license.

## Citation

```bibtex
@article{rnacentral2021,
  author    = {{RNAcentral Consortium}},
  doi       = {https://doi.org/10.1093/nar/gkaa921},
  journal   = {Nucleic Acids Research},
  month     = jan,
  number    = {D1},
  pages     = {D212--D220},
  publisher = {Oxford University Press (OUP)},
  title     = {{RNAcentral} 2021: secondary structure integration, improved sequence search and new member databases},
  url       = {https://academic.oup.com/nar/article/49/D1/D212/5940500},
  volume    = 49,
  year      = 2021
}

@article{sweeney2020exploring,
  author   = {Sweeney, Blake A. and Tagmazian, Arina A. and Ribas, Carlos E. and Finn, Robert D. and Bateman, Alex and Petrov, Anton I.},
  doi      = {https://doi.org/10.1002/cpbi.104},
  eprint   = {https://currentprotocols.onlinelibrary.wiley.com/doi/pdf/10.1002/cpbi.104},
  journal  = {Current Protocols in Bioinformatics},
  keywords = {Galaxy, ncRNA, non-coding RNA, RNAcentral, RNA-seq},
  number   = {1},
  pages    = {e104},
  title    = {Exploring Non-Coding RNAs in RNAcentral},
  url      = {https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.104},
  volume   = 71,
  year     = 2020
}

@article{rnacentral2019,
  author    = {{The RNAcentral Consortium}},
  doi       = {https://doi.org/10.1093/nar/gky1034},
  journal   = {Nucleic Acids Research},
  month     = jan,
  number    = {D1},
  pages     = {D221--D229},
  publisher = {Oxford University Press (OUP)},
  title     = {{RNAcentral}: a hub of information for non-coding {RNA} sequences},
  url       = {https://academic.oup.com/nar/article/47/D1/D221/5160993},
  volume    = 47,
  year      = 2019
}

@article{rnacentral2017,
  author    = {{The RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Kalvari, Ioanna and Howe, Kevin L and Gray, Kristian A and Bruford, Elspeth A and Kersey, Paul J and Cochrane, Guy and Finn, Robert D and Bateman, Alex and Kozomara, Ana and Griffiths-Jones, Sam and Frankish, Adam and Zwieb, Christian W and Lau, Britney Y and Williams, Kelly P and Chan, Patricia Pand Lowe, Todd M and Cannone, Jamie J and Gutell, Robin and Machnicka, Magdalena A and Bujnicki, Janusz M and Yoshihama, Maki and Kenmochi, Naoya and Chai, Benli and Cole, James R and Szymanski, Maciej and Karlowski, Wojciech M and Wood, Valerie and Huala, Eva and Berardini, Tanya Z and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Paraskevopoulou, Maria D and Vlachos, Ioannis S and Hatzigeorgiou, Artemis G and Ma, Lina and Zhang, Zhang and Puetz, Joern and Stadler, Peter F and McDonald, Daniel and Basu, Siddhartha and Fey, Petra and Engel, Stacia R and Cherry, J Michael and Volders, Pieter-Jan and Mestdagh, Pieter and Wower, Jacek and Clark, Michael B and Quek, Xiu Cheng and Dinger, Marcel E},
  doi       = {https://doi.org/10.1093/nar/gkw1008},
  journal   = {Nucleic Acids Research},
  month     = jan,
  number    = {D1},
  pages     = {D128--D134},
  publisher = {Oxford University Press (OUP)},
  title     = {{RNAcentral}: a comprehensive database of non-coding {RNA} sequences},
  url       = {https://academic.oup.com/nar/article/45/D1/D128/2333921},
  volume    = 45,
  year      = 2017
}

@article{rnacentral2015,
  author  = {{RNAcentral Consortium} and Petrov, Anton I and Kay, Simon J E and Gibson, Richard and Kulesha, Eugene and Staines, Dan and Bruford, Elspeth A and Wright, Mathew W and Burge, Sarah and Finn, Robert D and Kersey, Paul J and Cochrane, Guy and Bateman, Alex and Griffiths-Jones, Sam and Harrow, Jennifer and Chan, Patricia P and Lowe, Todd M and Zwieb, Christian W and Wower, Jacek and Williams, Kelly P and Hudson, Corey M and Gutell, Robin and Clark, Michael B and Dinger, Marcel and Quek, Xiu Cheng and Bujnicki, Janusz M and Chua, Nam-Hai and Liu, Jun and Wang, Huan and Skogerb{\o}, Geir and Zhao, Yi and Chen, Runsheng and Zhu, Weimin and Cole, James R and Chai, Benli and Huang, Hsien-Da and Huang, His-Yuan and Cherry, J Michael and Hatzigeorgiou, Artemis and Pruitt, Kim D},
  doi     = {https://doi.org/10.1093/nar/gku991},
  journal = {Nucleic Acids Research},
  month   = jan,
  number  = {Database issue},
  pages   = {D123--D129},
  title   = {{RNAcentral}: an international database of {ncRNA} sequences},
  url     = {https://academic.oup.com/nar/article/43/D1/D123/2439941},
  volume  = 43,
  year    = 2015
}

@article{bateman2011rnacentral,
  author    = {Bateman, Alex and Agrawal, Shipra and Birney, Ewan and Bruford, Elspeth A and Bujnicki, Janusz M and Cochrane, Guy and Cole, James R and Dinger, Marcel E and Enright, Anton J and Gardner, Paul P and Gautheret, Daniel and Griffiths-Jones, Sam and Harrow, Jen and Herrero, Javier and Holmes, Ian H and Huang, Hsien-Da and Kelly, Krystyna A and Kersey, Paul and Kozomara, Ana and Lowe, Todd M and Marz, Manja and Moxon, Simon andPruitt, Kim D and Samuelsson, Tore and Stadler, Peter F and Vilella, Albert J and Vogel, Jan-Hinnerk and Williams, Kelly P and Wright, Mathew W and Zwieb, Christian},
  doi       = {https://doi.org/10.1261/rna.2750811},
  journal   = {RNA},
  month     = nov,
  number    = 11,
  pages     = {1941--1946},
  publisher = {Cold Spring Harbor Laboratory},
  title     = {{RNAcentral}: A vision for an international database of {RNA} sequences},
  url       = {https://rnajournal.cshlp.org/content/17/11/1941.long},
  volume    = 17,
  year      = 2011
}
```
