Datasets:

songlab
/

TraitGym

Dataset card Data Studio Files Files and versions Community

Subset (4)

complex_traits · 11.4k rows

Split (1)

test · 11.4k rows

chrom stringclasses 22 values	pos int64 99.5k 249M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	trait stringclasses 259 values	label bool 2 classes	maf float64 0 0.5	ld_score float64 1.53 628	consequence stringclasses 16 values	tss_dist int64 0 1.58M	match_group stringlengths 5 37
1	14,647,875	A	G	0.000741		false	0.26377	91.876	dELS	49,157	dELS_15
1	14,849,995	T	C	0		false	0.075123	44.62	intron_variant	74,134	intron_variant_10
1	14,997,046	T	C	0		false	0.28544	41.853	dELS_flank	51,126	dELS_flank_0
1	15,243,025	T	G	0		false	0.13081	47.898	dELS_flank	4,197	dELS_flank_10
1	15,247,193	A	G	0.001678		false	0.39316	131.58	PLS	29	PLS_3
1	15,247,215	C	A	0.00161		false	0.39314	131.58	PLS	7	PLS_3
1	15,358,866	G	A	0		false	0.48369	30.827	dELS	13,434	dELS_9
1	15,502,099	C	G	0		false	0.028341	84.944	dELS_flank	4,952	dELS_flank_1
1	16,015,154	C	G	0		false	0.081398	64.209	3_prime_UTR_variant	2,670	3_prime_UTR_variant_2
1	16,091,497	C	T	0.003317		false	0.41757	178.74	dELS	17,845	dELS_8
1	16,178,825	A	G	0.988178	GGT	true	0.41997	186.1	dELS	22,755	dELS_8
1	16,187,874	A	G	0		false	0.094983	54.653	dELS	18,651	dELS_5
1	16,450,309	C	T	0		false	0.41379	107.58	non_coding_transcript_exon_variant	9,572	non_coding_transcript_exon_variant_2
1	16,450,373	G	A	0		false	0.41378	107.59	non_coding_transcript_exon_variant	9,636	non_coding_transcript_exon_variant_2
1	16,451,770	G	T	0		false	0.41381	107.61	non_coding_transcript_exon_variant	11,033	non_coding_transcript_exon_variant_2
1	16,998,263	G	C	0		false	0.14117	46.015	dELS_flank	1,979	dELS_flank_10
1	17,207,181	G	A	0.001119		false	0.27095	48.008	dELS	2,052	dELS_3
1	17,207,189	G	A	0.000774		false	0.26967	48.257	dELS	2,060	dELS_3
1	17,261,023	T	C	0		false	0.008337	5.6543	intron_variant	11,924	intron_variant_7
1	17,265,255	C	T	0		false	0.090727	65.903	dELS	16,156	dELS_14
1	17,423,008	G	A	0.001954		false	0.36411	161.1	intron_variant	15,552	intron_variant_12
1	17,523,506	G	A	0		false	0.39785	87.111	dELS	16,191	dELS_10
1	17,560,792	T	C	0		false	0.14675	25.221	dELS	19,760	dELS_16
1	17,560,950	C	T	0		false	0.14665	25.223	dELS	19,602	dELS_16
1	17,565,099	C	T	0		false	0.062466	50.887	dELS	15,453	dELS_4
1	17,601,764	A	G	0		false	0.22455	13.925	dELS	16,551	dELS_6
1	18,028,918	T	C	0		false	0.07007	46.342	intron_variant	78,879	intron_variant_10
1	18,091,949	C	T	0		false	0.14868	27.681	dELS	15,848	dELS_16
1	18,148,933	T	G	0		false	0.28432	40.183	dELS_flank	41,134	dELS_flank_0
1	18,298,526	T	C	0		false	0.20647	31.765	dELS	182,403	dELS_29
1	18,645,140	G	C	0		false	0.38166	84.201	dELS	13,615	dELS_10
1	18,659,133	G	A	0		false	0.009598	15.897	dELS_flank	27,608	dELS_flank_13
1	18,904,636	G	A	0		false	0.050461	27.793	3_prime_UTR_variant	1,911	3_prime_UTR_variant_3
1	19,052,883	C	T	0		false	0.001117	6.9115	intergenic_variant	29,356	intergenic_variant_3
1	19,251,698	G	A	0		false	0.4116	133.09	PLS	106	PLS_3
1	19,725,880	C	T	0		false	0.36736	28.684	dELS	61,004	dELS_0
1	19,864,451	A	T	0		false	0.38112	91.488	dELS	17,943	dELS_10
1	19,917,340	G	T	0.002292		false	0.3323	71.266	intergenic_variant	6,276	intergenic_variant_5
1	20,051,858	G	A	0		false	0.050879	67.803	intron_variant	18,335	intron_variant_8
1	20,194,239	T	C	0		false	0.22867	58.835	3_prime_UTR_variant	7,720	3_prime_UTR_variant_1
1	20,271,858	C	T	0		false	0.35967	103.47	pELS	19,016	pELS_6
1	20,303,131	C	T	0		false	0.11247	71.291	5_prime_UTR_variant	49	5_prime_UTR_variant_2
1	20,373,372	T	A	0		false	0.004725	17.087	non_coding_transcript_exon_variant	70,290	non_coding_transcript_exon_variant_6
1	20,526,481	G	T	0		false	0.051092	49.614	non_coding_transcript_exon_variant	18,329	non_coding_transcript_exon_variant_1
1	20,557,029	G	C	0		false	0.33089	66.531	intergenic_variant	4,455	intergenic_variant_5
1	21,302,954	A	C	0.00256		false	0.43681	95.755	dELS	3,954	dELS_26
1	21,417,324	G	A	0		false	0.043774	48.139	non_coding_transcript_exon_variant	22,803	non_coding_transcript_exon_variant_1
1	21,439,960	A	C	0		false	0.40782	116.39	PLS	167	PLS_3
1	21,493,549	A	G	0.999998	Ca	true	0.38873	91.82	intergenic_variant	15,873	intergenic_variant_0
1	21,571,283	A	G	0.000533		false	0.42581	68.188	intron_variant	979	intron_variant_1
1	21,577,881	A	C	0		false	0.2139	57.253	3_prime_UTR_variant	7,577	3_prime_UTR_variant_1
1	21,856,349	G	A	0		false	0.058403	53.871	dELS	16,027	dELS_4
1	22,045,218	G	T	0		false	0.12595	127.96	dELS	7,408	dELS_11
1	22,076,608	A	G	0		false	0.001791	48.464	5_prime_UTR_variant	273	5_prime_UTR_variant_1
1	22,447,507	G	A	0		false	0.23639	43.032	dELS_flank	4,343	dELS_flank_14
1	22,524,719	C	T	0		false	0.01002	27.329	intron_variant	38,769	intron_variant_9
1	22,583,224	A	G	0		false	0.22412	77.325	dELS	19,659	dELS_25
1	22,583,376	C	T	0		false	0.097231	53.363	dELS	19,811	dELS_5
1	22,764,420	C	T	0		false	0.010742	5.4474	intron_variant	10,757	intron_variant_7
1	22,776,363	G	A	0		false	0.17935	45.362	pELS	1,184	pELS_4
1	22,778,275	C	T	0		false	0.13833	47.742	dELS_flank	3,096	dELS_flank_10
1	23,246,910	G	A	0		false	0.001451	6.8685	intergenic_variant	29,407	intergenic_variant_3
1	23,383,982	C	T	0.965786	HDLC	true	0.49916	132.63	3_prime_UTR_variant	14,145	3_prime_UTR_variant_0
1	23,559,582	T	C	0.008327		false	0.44096	49.193	PLS	80	PLS_4
1	23,643,640	C	T	0		false	0.28617	40.919	dELS_flank	48,101	dELS_flank_0
1	23,651,381	T	C	0		false	0.018292	49.125	dELS	40,360	dELS_23
1	23,651,724	G	T	0		false	0.018283	49.136	dELS	40,017	dELS_23
1	24,100,276	C	G	0.00122		false	0.4643	44.414	dELS	11,858	dELS_24
1	24,203,826	G	A	0		false	0.11006	16.808	dELS_flank	4,267	dELS_flank_9
1	24,228,561	A	T	0		false	0.011902	43.492	dELS	29,002	dELS_20
1	24,536,153	T	G	0		false	0.49923	143.94	3_prime_UTR_variant	19,933	3_prime_UTR_variant_0
1	24,536,159	A	G	0		false	0.49919	143.94	3_prime_UTR_variant	19,927	3_prime_UTR_variant_0
1	24,914,625	A	G	0.999468	FEV1FVC	true	0.48686	31.461	dELS	15,650	dELS_9
1	24,965,206	C	T	1	AG,Alb,Balding_Type4	true	0.014671	28.562	PLS	195	PLS_0
1	25,196,976	C	G	0		false	0.33654	30.697	dELS_flank	35,509	dELS_flank_5
1	25,351,114	G	A	1	HbA1c	true	0.13313	64.255	intron_variant	12,779	intron_variant_0
1	25,430,243	G	T	0.000729		false	0.0128	14.796	pELS	50	pELS_1
1	25,617,022	G	A	0		false	0.063069	19.043	5_prime_UTR_variant	230	5_prime_UTR_variant_5
1	25,699,325	G	A	0		false	0.039838	49.712	dELS_flank	10,276	dELS_flank_11
1	25,727,467	C	T	0		false	0.15272	28.886	dELS	17,864	dELS_16
1	25,905,700	G	A	0		false	0.018648	16.047	pELS	210	pELS_1
1	26,046,114	G	C	0.008488		false	0.1058	89.165	5_prime_UTR_variant	0	5_prime_UTR_variant_2
1	26,159,026	G	C	0		false	0.31212	111.64	PLS	52	PLS_1
1	26,417,412	C	T	0		false	0.35579	84.566	dELS_flank	6,594	dELS_flank_8
1	26,501,735	A	G	0		false	0.008236	42.795	dELS	28,025	dELS_20
1	26,577,079	T	C	0		false	0.39156	92.429	intergenic_variant	4,808	intergenic_variant_0
1	26,695,422	G	C	0.999566	ALT,SHBG,TG,UA	true	0.023374	84.56	PLS_flank	592	PLS_flank_0
1	26,853,597	A	C	0.911216	ALP	true	0.023521	84.264	dELS_flank	3,234	dELS_flank_1
1	26,998,576	G	A	0.002547		false	0.020288	82.591	dELS_flank	4,256	dELS_flank_1
1	27,491,180	A	C	0		false	0.17992	41.414	pELS	1,012	pELS_4
1	27,576,980	G	A	0.001392		false	0.008055	42.654	dELS	26,498	dELS_20
1	27,605,187	G	A	0		false	0.18867	37.437	pELS	1,009	pELS_4
1	27,935,898	A	T	0		false	0.27857	153.87	pELS	787	pELS_0
1	28,056,556	A	G	0.001859		false	0.27291	153.6	pELS	1,530	pELS_0
1	28,059,212	C	T	0.002821		false	0.27593	152.41	pELS	1,124	pELS_0
1	28,599,026	C	T	0		false	0.18859	294.39	dELS_flank	6,760	dELS_flank_2
1	29,099,321	G	A	0.001385		false	0.40881	188.23	dELS	23,179	dELS_8
1	29,159,616	C	T	0.981676	Ht	true	0.053917	46.635	non_coding_transcript_exon_variant	22,265	non_coding_transcript_exon_variant_1
1	29,395,382	C	T	0		false	0.26073	27.62	dELS	158,742	dELS_27
1	29,745,193	G	A	0		false	0.41739	81.653	dELS	508,553	dELS_12

Subsets and Splits